Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   S65EC_RS17890 Genome accession   NZ_CP036245
Coordinates   3376828..3378066 (+) Length   412 a.a.
NCBI ID   WP_001161824.1    Uniprot ID   A0A0H2VCB2
Organism   Escherichia coli strain S65EC     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 3371828..3383066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S65EC_RS17875 (S65EC_03231) - 3372343..3374019 (+) 1677 WP_001327874.1 polysaccharide biosynthesis/export family protein -
  S65EC_RS17880 (S65EC_03232) kdsB 3374029..3374769 (+) 741 WP_001327873.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  S65EC_RS17885 (S65EC_03233) - 3374766..3376793 (+) 2028 WP_000579529.1 capsular polysaccharide biosynthesis protein -
  S65EC_RS17890 (S65EC_03234) kpsS 3376828..3378066 (+) 1239 WP_001161824.1 capsular biosynthesis protein Regulator
  S65EC_RS17895 (S65EC_03235) - 3378228..3379223 (-) 996 WP_001208051.1 hypothetical protein -
  S65EC_RS17900 (S65EC_03236) - 3379229..3380257 (-) 1029 WP_130647909.1 XcbB/CpsF family capsular polysaccharide biosynthesis protein -
  S65EC_RS27590 (S65EC_03237) - 3380360..3382420 (-) 2061 WP_284147878.1 glycosyltransferase -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 48808.38 Da        Isoelectric Point: 10.1113

>NTDB_id=306915 S65EC_RS17890 WP_001161824.1 3376828..3378066(+) (kpsS) [Escherichia coli strain S65EC]
MQGNALTILLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRALHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLDERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNGGYYGGVKFENALGM
NKDFLFGSKSIS

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=306915 S65EC_RS17890 WP_001161824.1 3376828..3378066(+) (kpsS) [Escherichia coli strain S65EC]
ATGCAAGGCAACGCACTAACCATTTTATTATCGGGTAAAAAATATCTGCTATTGCAGGGACCGATGGGACCTTTTTTCAA
TGACGTCGCCGAATGGTTAGAGTCATTAGGCCGTAACGCTGTGAATGTTGTCTTCAACGGCGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTTCCCGGATGGTTACGGGCTCTCCACCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGCTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATAACCGTTGAAGAAGGCGGAGTGAACGCATATTCCTCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTGCCAGATATGCCTGCGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGCATTGGCCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGTCATGAGTTCCCTCGCTACCGCCACCACAA
ATCATTTTCCCCCTGGTATGAAGCACGTTGCTGGGTTCGTGCGTACTGGCGCAAGCAACTTTACAAGGTAACACAGCGCA
AGGTATTGCCGAGGTTAATGAATGAGCTGGATCAGCGTTATTATCTTGCCGTTTTGCAGGTGTATAACGATAGCCAGATT
CGTAACCACAGTAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCACGTAAAGCGCCGAAAGA
AAGTTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGATTGAGTAAGG
AATATGGCTTAGATGAGCGAGTCATTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCATGCAAAAGCGGTAGTG
ACGATTAACAGTACGGCGGGGATCTCTGCGCTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGACATGAAACTGTTTAAGAAGT
TTCGGGGGTATTTATTGGTGAAGACGCAGGTTAATGGGGGTTATTATGGAGGAGTAAAATTTGAGAATGCATTGGGTATG
AATAAAGATTTTTTGTTTGGATCAAAGTCAATATCATAA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2VCB2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.846

94.417

0.376