Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   S65EC_RS17785 Genome accession   NZ_CP036245
Coordinates   3359421..3359897 (+) Length   158 a.a.
NCBI ID   WP_001186726.1    Uniprot ID   -
Organism   Escherichia coli strain S65EC     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3354421..3364897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S65EC_RS17755 (S65EC_03207) - 3354589..3357105 (+) 2517 WP_001328678.1 hypothetical protein -
  S65EC_RS17760 (S65EC_03208) - 3357181..3357636 (+) 456 WP_000581502.1 IrmA family protein -
  S65EC_RS17765 (S65EC_03209) - 3357715..3357948 (+) 234 WP_001119727.1 DUF905 family protein -
  S65EC_RS17775 (S65EC_03210) - 3358049..3358867 (+) 819 WP_001234616.1 DUF932 domain-containing protein -
  S65EC_RS17780 - 3358922..3359405 (+) 484 Protein_3253 antirestriction protein -
  S65EC_RS17785 (S65EC_03212) radC 3359421..3359897 (+) 477 WP_001186726.1 RadC family protein Machinery gene
  S65EC_RS17790 (S65EC_03213) - 3359960..3360181 (+) 222 WP_000692329.1 DUF987 domain-containing protein -
  S65EC_RS17795 (S65EC_03214) - 3360200..3360334 (+) 135 Protein_3256 antitoxin of toxin-antitoxin stability system -
  S65EC_RS17800 (S65EC_03215) - 3360415..3360840 (+) 426 WP_000422741.1 transposase -
  S65EC_RS17805 (S65EC_03216) tnpB 3360837..3361186 (+) 350 Protein_3258 IS66 family insertion sequence element accessory protein TnpB -
  S65EC_RS17810 (S65EC_03218) - 3361217..3362829 (+) 1613 Protein_3259 IS66-like element ISEc23 family transposase -
  S65EC_RS17815 (S65EC_03219) - 3362861..3363382 (+) 522 Protein_3260 antitoxin of toxin-antitoxin stability system -
  S65EC_RS17820 (S65EC_03220) - 3363432..3363812 (+) 381 WP_001285596.1 type IV toxin-antitoxin system YeeU family antitoxin -
  S65EC_RS17825 (S65EC_03221) - 3363889..3364266 (+) 378 WP_000854688.1 TA system toxin CbtA family protein -
  S65EC_RS17830 (S65EC_03222) - 3364263..3364751 (+) 489 WP_000761701.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17673.32 Da        Isoelectric Point: 7.2020

>NTDB_id=306914 S65EC_RS17785 WP_001186726.1 3359421..3359897(+) (radC) [Escherichia coli strain S65EC]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=306914 S65EC_RS17785 WP_001186726.1 3359421..3359897(+) (radC) [Escherichia coli strain S65EC]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCTCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392