Detailed information NTG0306910

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: S65EC_RS16080
• Genome accession: NZ_CP036245
• Coordinates: 3006959..3007951 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain S65EC
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3001959..3012951

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
S65EC_RS16060 (S65EC_02891)	ygbM	3002597..3003373 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
S65EC_RS16065 (S65EC_02892)	ygbN	3003462..3004826 (+)	1365	WP_000104433.1	GntP family transporter	-
S65EC_RS16070 (S65EC_02893)	-	3004969..3006012 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
S65EC_RS16075 (S65EC_02894)	-	3006237..3006788 (+)	552	WP_001179444.1	flavodoxin family protein	-
S65EC_RS16080 (S65EC_02895)	rpoS	3006959..3007951 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
S65EC_RS16085 (S65EC_02896)	nlpD	3008014..3009108 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
S65EC_RS16090 (S65EC_02897)	pcm	3009293..3009919 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
S65EC_RS16095 (S65EC_02898)	surE	3009913..3010674 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
S65EC_RS16100 (S65EC_02899)	truD	3010655..3011704 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
S65EC_RS16105 (S65EC_02900)	ispF	3011701..3012180 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
S65EC_RS16110 (S65EC_02901)	ispD	3012180..3012890 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=306910 S65EC_RS16080 WP_000081550.1 3006959..3007951(-) (rpoS) [Escherichia coli strain S65EC]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=306910 S65EC_RS16080 WP_000081550.1 3006959..3007951(-) (rpoS) [Escherichia coli strain S65EC]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715