Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   D9K49_RS16340 Genome accession   NZ_CP036202
Coordinates   3387485..3388912 (-) Length   475 a.a.
NCBI ID   WP_000980607.1    Uniprot ID   -
Organism   Escherichia coli strain L725     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3382485..3393912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9K49_RS16310 (D9K49_16310) yeeZ 3382540..3383364 (+) 825 WP_000754758.1 SDR family oxidoreductase -
  D9K49_RS16315 (D9K49_16315) yeeY 3383410..3384339 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  D9K49_RS16320 (D9K49_16320) yoeI 3384554..3384616 (+) 63 WP_010723108.1 membrane protein YoeI -
  D9K49_RS16325 (D9K49_16325) plaP 3384606..3385964 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  D9K49_RS16330 (D9K49_16330) tsuA 3386143..3387201 (+) 1059 WP_000492346.1 thiosulfate utilization transporter TsuA/YeeE -
  D9K49_RS16335 (D9K49_16335) tsuB 3387215..3387442 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  D9K49_RS16340 (D9K49_16340) sbcB 3387485..3388912 (-) 1428 WP_000980607.1 exodeoxyribonuclease I Machinery gene
  D9K49_RS16345 (D9K49_16345) dacD 3389121..3390287 (+) 1167 WP_046201427.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  D9K49_RS16350 (D9K49_16350) sbmC 3390406..3390879 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  D9K49_RS16355 (D9K49_16355) yeeA 3391077..3392135 (+) 1059 WP_001200891.1 FUSC family protein -
  D9K49_RS16360 (D9K49_16360) tmaR 3392307..3392636 (+) 330 WP_000450409.1 DUF496 family protein -
  D9K49_RS16365 (D9K49_16365) - 3392737..3393180 (-) 444 WP_073527605.1 EutP/PduV family microcompartment system protein -
  D9K49_RS16370 (D9K49_16370) pduU 3393185..3393535 (-) 351 WP_000211393.1 propanediol utilization microcompartment protein PduU -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54458.73 Da        Isoelectric Point: 5.4700

>NTDB_id=306855 D9K49_RS16340 WP_000980607.1 3387485..3388912(-) (sbcB) [Escherichia coli strain L725]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=306855 D9K49_RS16340 WP_000980607.1 3387485..3388912(-) (sbcB) [Escherichia coli strain L725]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACTTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATCGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583

Multiple sequence alignment