Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   D9K49_RS12620 Genome accession   NZ_CP036202
Coordinates   2613631..2614146 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain L725     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2608631..2619146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9K49_RS12575 (D9K49_12575) csrA 2609217..2609402 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  D9K49_RS12605 (D9K49_12605) yqaB 2610861..2611427 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  D9K49_RS12610 (D9K49_12610) yqaA 2611424..2611852 (+) 429 WP_001287457.1 YqaA family protein -
  D9K49_RS12615 (D9K49_12615) gshA 2611925..2613481 (+) 1557 WP_000611802.1 glutamate--cysteine ligase -
  D9K49_RS12620 (D9K49_12620) luxS 2613631..2614146 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  D9K49_RS12625 (D9K49_12625) emrB 2614210..2615748 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  D9K49_RS12630 (D9K49_12630) emrA 2615765..2616937 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  D9K49_RS12635 (D9K49_12635) emrR 2617064..2617594 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  D9K49_RS12640 (D9K49_12640) ygaH 2617685..2618020 (-) 336 WP_000119764.1 L-valine transporter subunit YgaH -
  D9K49_RS12645 (D9K49_12645) ygaZ 2618010..2618747 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=306845 D9K49_RS12620 WP_001130211.1 2613631..2614146(+) (luxS) [Escherichia coli strain L725]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=306845 D9K49_RS12620 WP_001130211.1 2613631..2614146(+) (luxS) [Escherichia coli strain L725]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAATGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment