Detailed information NTG0306842

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: D9K49_RS12315
• Genome accession: NZ_CP036202
• Coordinates: 2556681..2557673 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain L725
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2551681..2562673

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D9K49_RS12285 (D9K49_12285)	ispD	2551742..2552452 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
D9K49_RS12290 (D9K49_12290)	ispF	2552452..2552931 (+)	480	WP_001219251.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
D9K49_RS12295 (D9K49_12295)	truD	2552928..2553977 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
D9K49_RS12300 (D9K49_12300)	surE	2553958..2554719 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
D9K49_RS12305 (D9K49_12305)	pcm	2554713..2555339 (+)	627	WP_032142000.1	protein-L-isoaspartate O-methyltransferase	-
D9K49_RS12310 (D9K49_12310)	nlpD	2555524..2556618 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
D9K49_RS12315 (D9K49_12315)	rpoS	2556681..2557673 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
D9K49_RS12320 (D9K49_12320)	-	2557794..2558201 (-)	408	WP_001208070.1	MarR family transcriptional regulator	-
D9K49_RS12325 (D9K49_12325)	-	2558348..2558941 (+)	594	WP_130723382.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
D9K49_RS12330 (D9K49_12330)	-	2558941..2560368 (+)	1428	WP_000863195.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
D9K49_RS12335 (D9K49_12335)	-	2560379..2560615 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
D9K49_RS12340 (D9K49_12340)	ygbN	2560654..2562018 (-)	1365	WP_000104429.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=306842 D9K49_RS12315 WP_000081550.1 2556681..2557673(+) (rpoS) [Escherichia coli strain L725]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=306842 D9K49_RS12315 WP_000081550.1 2556681..2557673(+) (rpoS) [Escherichia coli strain L725]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715