Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   D9K49_RS07555 Genome accession   NZ_CP036202
Coordinates   1584223..1584891 (+) Length   222 a.a.
NCBI ID   WP_001352775.1    Uniprot ID   -
Organism   Escherichia coli strain L725     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1579223..1589891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9K49_RS07525 (D9K49_07525) yicC 1579242..1580105 (-) 864 WP_000621336.1 YicC/YloC family endoribonuclease -
  D9K49_RS07530 (D9K49_07530) rph 1580232..1580948 (+) 717 WP_001247093.1 ribonuclease PH -
  D9K49_RS07535 (D9K49_07535) pyrE 1581014..1581655 (+) 642 WP_000806162.1 orotate phosphoribosyltransferase -
  D9K49_RS07540 (D9K49_07540) slmA 1581692..1582288 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  D9K49_RS07545 (D9K49_07545) dut 1582395..1582853 (-) 459 WP_000976070.1 dUTP diphosphatase -
  D9K49_RS07550 (D9K49_07550) coaBC 1582831..1584051 (-) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  D9K49_RS07555 (D9K49_07555) radC 1584223..1584891 (+) 669 WP_001352775.1 DNA repair protein RadC Machinery gene
  D9K49_RS07560 (D9K49_07560) rpmB 1585108..1585344 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  D9K49_RS07565 (D9K49_07565) rpmG 1585365..1585532 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  D9K49_RS07570 (D9K49_07570) mutM 1585630..1586439 (+) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  D9K49_RS07575 (D9K49_07575) coaD 1586478..1586957 (-) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  D9K49_RS07580 (D9K49_07580) waaA 1586965..1588242 (-) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  D9K49_RS07585 (D9K49_07585) rfaQ 1588655..1589713 (+) 1059 WP_000360412.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25292.38 Da        Isoelectric Point: 7.9748

>NTDB_id=306824 D9K49_RS07555 WP_001352775.1 1584223..1584891(+) (radC) [Escherichia coli strain L725]
MKNNSQLMMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=306824 D9K49_RS07555 WP_001352775.1 1584223..1584891(+) (radC) [Escherichia coli strain L725]
GTGAAAAACAATTCACAGCTGATGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(7-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496