Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   SDEG_RS06220 Genome accession   NC_012891
Coordinates   1217856..1218335 (-) Length   159 a.a.
NCBI ID   WP_012767128.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis GGS_124     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1212856..1223335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDEG_RS06200 (SDEG_1262) - 1213155..1213496 (-) 342 WP_012767124.1 hypothetical protein -
  SDEG_RS06205 (SDEG_1263) - 1213674..1215326 (+) 1653 WP_014612356.1 Rqc2 family fibronectin-binding protein -
  SDEG_RS06210 (SDEG_1264) - 1215389..1216636 (-) 1248 WP_003062250.1 tetratricopeptide repeat protein -
  SDEG_RS06215 (SDEG_1265) - 1216626..1217807 (-) 1182 WP_012767127.1 AI-2E family transporter -
  SDEG_RS06220 (SDEG_1266) mutX 1217856..1218335 (-) 480 WP_012767128.1 NUDIX hydrolase Machinery gene
  SDEG_RS06225 (SDEG_1267) - 1218531..1218722 (+) 192 WP_003058922.1 hypothetical protein -
  SDEG_RS10810 (SDEG_1268) - 1218810..1219178 (-) 369 WP_227985721.1 CPBP family intramembrane glutamic endopeptidase -
  SDEG_RS11130 - 1219141..1219506 (-) 366 WP_003060933.1 hypothetical protein -
  SDEG_RS06235 (SDEG_1269) rfbB 1219695..1220738 (-) 1044 WP_041789035.1 dTDP-glucose 4,6-dehydratase -
  SDEG_RS06240 (SDEG_1270) - 1220982..1221575 (-) 594 WP_012767131.1 dTDP-4-dehydrorhamnose 3,5-epimerase family protein -
  SDEG_RS06245 (SDEG_1271) rfbA 1221575..1222444 (-) 870 WP_003057684.1 glucose-1-phosphate thymidylyltransferase RfbA -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 18562.69 Da        Isoelectric Point: 4.2471

>NTDB_id=30679 SDEG_RS06220 WP_012767128.1 1217856..1218335(-) (mutX) [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
MTQLATICYIDNGESLLLLHRNKKENDVHEGKWISVGGKLEAGETPDECARREILEETHLTVTEMAFKGIITFPEFTPGH
DWYTYVFKVTGFEGDLISDEESREGTLEWVPYNQVLEKPTWEGDYDIFKWILEDRPFFSAKFTYNETNQLTEKSVTFYD

Nucleotide


Download         Length: 480 bp        

>NTDB_id=30679 SDEG_RS06220 WP_012767128.1 1217856..1218335(-) (mutX) [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
ATGACCCAATTGGCAACTATTTGTTATATTGATAATGGCGAGTCCTTGCTATTATTACACCGCAATAAAAAAGAAAATGA
TGTCCACGAAGGGAAGTGGATTTCAGTTGGAGGCAAGCTTGAAGCGGGAGAGACCCCAGATGAGTGTGCCCGTCGTGAGA
TTCTAGAGGAAACCCATTTGACCGTTACAGAGATGGCTTTTAAAGGAATCATTACTTTTCCAGAATTCACACCAGGTCAT
GATTGGTATACCTATGTTTTTAAAGTAACAGGATTTGAAGGGGACCTCATTTCCGATGAGGAGTCACGTGAAGGCACCCT
GGAATGGGTGCCATATAATCAGGTATTGGAAAAACCGACATGGGAAGGGGATTATGACATTTTTAAATGGATTTTAGAGG
ATCGCCCCTTTTTTTCTGCCAAATTTACCTACAATGAAACTAACCAACTTACTGAGAAATCCGTCACCTTTTATGACTGA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(3-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

68.553

100

0.686

Multiple sequence alignment