Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   EYD11_RS17050 Genome accession   NZ_CP036177
Coordinates   3490690..3491295 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain WCHEC025970     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3485690..3496295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYD11_RS17030 (EYD11_17025) aes 3485727..3486686 (+) 960 WP_000801813.1 acetyl esterase -
  EYD11_RS17035 (EYD11_17030) hemH 3486683..3487645 (-) 963 WP_001250103.1 ferrochelatase -
  EYD11_RS17040 (EYD11_17035) adk 3487881..3488525 (-) 645 WP_001220233.1 adenylate kinase -
  EYD11_RS17045 (EYD11_17040) htpG 3488706..3490580 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  EYD11_RS17050 (EYD11_17045) recR 3490690..3491295 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  EYD11_RS17055 (EYD11_17050) ybaB 3491295..3491624 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  EYD11_RS17060 (EYD11_17055) dnaX 3491677..3493608 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  EYD11_RS17065 (EYD11_17060) apt 3493737..3494288 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  EYD11_RS17070 (EYD11_17065) ybaN 3494441..3494818 (-) 378 WP_001188905.1 DUF454 family protein -
  EYD11_RS17075 (EYD11_17070) priC 3494888..3495415 (+) 528 WP_000844874.1 primosomal replication protein N'' -
  EYD11_RS17080 (EYD11_17075) rsmS 3495429..3495590 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=306766 EYD11_RS17050 WP_001195025.1 3490690..3491295(-) (recR) [Escherichia coli strain WCHEC025970]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=306766 EYD11_RS17050 WP_001195025.1 3490690..3491295(-) (recR) [Escherichia coli strain WCHEC025970]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTTCCGGTTGGCGGCGAGCTGGAAATGGTCGACGGCAC
CACGTTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443