Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EYD11_RS08880 Genome accession   NZ_CP036177
Coordinates   1861108..1861584 (-) Length   158 a.a.
NCBI ID   WP_001186774.1    Uniprot ID   -
Organism   Escherichia coli strain WCHEC025970     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1856108..1866584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYD11_RS27035 - 1856429..1856653 (-) 225 Protein_1734 transposase -
  EYD11_RS08840 (EYD11_08840) - 1856734..1857138 (+) 405 WP_000839179.1 transposase -
  EYD11_RS08845 (EYD11_08845) tnpB 1857135..1857482 (+) 348 WP_000612626.1 IS66 family insertion sequence element accessory protein TnpB -
  EYD11_RS08850 (EYD11_08850) - 1857531..1859070 (+) 1540 Protein_1737 IS66-like element ISEc22 family transposase -
  EYD11_RS08855 (EYD11_08855) - 1859501..1859581 (-) 81 Protein_1738 hypothetical protein -
  EYD11_RS08860 (EYD11_08860) - 1859681..1859829 (-) 149 Protein_1739 DUF5983 family protein -
  EYD11_RS08865 (EYD11_08865) - 1859826..1860203 (-) 378 WP_000854761.1 TA system toxin CbtA family protein -
  EYD11_RS08870 (EYD11_08870) - 1860293..1860661 (-) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  EYD11_RS08875 (EYD11_08875) yeeT 1860824..1861045 (-) 222 WP_000692341.1 DUF987 domain-containing protein -
  EYD11_RS08880 (EYD11_08880) radC 1861108..1861584 (-) 477 WP_001186774.1 RadC family protein Machinery gene
  EYD11_RS08885 (EYD11_08885) - 1861600..1862073 (-) 474 WP_000855059.1 antirestriction protein -
  EYD11_RS08895 (EYD11_08895) - 1862415..1863233 (-) 819 WP_001234729.1 DUF932 domain-containing protein -
  EYD11_RS08905 (EYD11_08905) - 1863351..1863546 (-) 196 Protein_1746 DUF905 family protein -
  EYD11_RS08910 (EYD11_08910) - 1863617..1866433 (-) 2817 WP_108703246.1 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17661.27 Da        Isoelectric Point: 7.2020

>NTDB_id=306746 EYD11_RS08880 WP_001186774.1 1861108..1861584(-) (radC) [Escherichia coli strain WCHEC025970]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=306746 EYD11_RS08880 WP_001186774.1 1861108..1861584(-) (radC) [Escherichia coli strain WCHEC025970]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGGC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment