Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   DXX91_RS17880 Genome accession   NZ_CP031424
Coordinates   3569686..3570831 (+) Length   381 a.a.
NCBI ID   WP_015387560.1    Uniprot ID   -
Organism   Bacillus velezensis strain B-4     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3564686..3575831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXX91_RS17860 - 3565160..3565876 (-) 717 WP_048367767.1 Crp/Fnr family transcriptional regulator -
  DXX91_RS17865 narK 3565974..3567164 (-) 1191 WP_044052814.1 nitrate transporter NarK -
  DXX91_RS17870 argS 3567299..3568969 (-) 1671 WP_003151071.1 arginine--tRNA ligase -
  DXX91_RS17875 - 3568966..3569394 (-) 429 WP_003151069.1 DUF1934 family protein -
  DXX91_RS17880 rapF 3569686..3570831 (+) 1146 WP_015387560.1 tetratricopeptide repeat protein Regulator
  DXX91_RS17885 - 3570815..3570934 (+) 120 WP_015387559.1 PhrC/PhrF family phosphatase-inhibitory pheromone -
  DXX91_RS17890 - 3571133..3571336 (+) 204 WP_003151064.1 helix-turn-helix transcriptional regulator -
  DXX91_RS17895 - 3571350..3571553 (+) 204 WP_003151062.1 hypothetical protein -
  DXX91_RS20250 - 3571588..3571774 (+) 187 Protein_3447 DUF4177 domain-containing protein -
  DXX91_RS17905 - 3571962..3572243 (+) 282 WP_014306021.1 hypothetical protein -
  DXX91_RS17910 - 3572287..3572799 (+) 513 WP_032859656.1 stage II sporulation protein M -
  DXX91_RS17920 - 3573390..3573608 (-) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  DXX91_RS17925 speB 3573778..3574650 (-) 873 WP_003151054.1 agmatinase -
  DXX91_RS17930 speE 3574710..3575540 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45541.70 Da        Isoelectric Point: 4.6084

>NTDB_id=306715 DXX91_RS17880 WP_015387560.1 3569686..3570831(+) (rapF) [Bacillus velezensis strain B-4]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEEDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKLDFVKDCIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQGNYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNMAIARQYHDKGVSYAEEAEDSLYIVEYEFLESLYVGEPDEEAI
MECFDFLRDKMMYADLEDFALDVAKYYHERENFEKAAAYFLKVEETRQQIQGGVKLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=306715 DXX91_RS17880 WP_015387560.1 3569686..3570831(+) (rapF) [Bacillus velezensis strain B-4]
GTGGCGAGTGTTTTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAGCTTGCAGGCCTGGAAGAAGATCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGCTGGATTTTG
TCAAAGATTGTATCGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCCTACTATTATATGAAGCAGACTTATTTTTCT
ATGGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCTTT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAGGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCTCAATTAATGGGCCGGACTCTATATAATATCGGACTTTGTTTTAACAGCCAAGGAAATTACAAACCA
GCCATTGATTACATAAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATTATCACTTCTCTCCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATATGGCCATAGCCAGACAATATCATGACAAAGGGGTATCTTATGCAGAGG
AGGCAGAAGATTCCCTATATATAGTCGAATATGAATTTTTAGAATCTTTGTATGTCGGTGAGCCTGATGAAGAAGCAATC
ATGGAATGTTTTGACTTTCTCAGAGATAAAATGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
TCATGAAAGAGAGAATTTCGAGAAGGCTGCTGCATATTTTTTAAAGGTGGAAGAAACAAGACAGCAGATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(189-253)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

78.74

100

0.787
  rapC Bacillus subtilis subsp. subtilis str. 168

57.105

99.738

0.57

Multiple sequence alignment