Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   KAN02_RS10685 Genome accession   NZ_CP036171
Coordinates   2211163..2211798 (-) Length   211 a.a.
NCBI ID   WP_087605558.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain KAN02     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2206163..2216798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KAN02_RS10660 (KAN02_10660) - 2206219..2207199 (-) 981 WP_032011231.1 DNA polymerase III subunit delta' -
  KAN02_RS10665 (KAN02_10665) kdsB 2207211..2207972 (-) 762 WP_004887485.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KAN02_RS10670 (KAN02_10670) lpxK 2207982..2208992 (-) 1011 WP_016804848.1 tetraacyldisaccharide 4'-kinase -
  KAN02_RS10675 (KAN02_10675) msbA 2208995..2210722 (-) 1728 WP_022574664.1 lipid A export permease/ATP-binding protein MsbA -
  KAN02_RS10680 (KAN02_10680) - 2210719..2211147 (-) 429 WP_000669684.1 ExbD/TolR family protein -
  KAN02_RS10685 (KAN02_10685) exbB 2211163..2211798 (-) 636 WP_087605558.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KAN02_RS10690 (KAN02_10690) - 2211848..2212735 (-) 888 WP_004709129.1 ParB/RepB/Spo0J family partition protein -
  KAN02_RS10695 (KAN02_10695) - 2212732..2213514 (-) 783 WP_002050124.1 ParA family protein -
  KAN02_RS10700 (KAN02_10700) rsmG 2213536..2214168 (-) 633 WP_002050181.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  KAN02_RS10705 (KAN02_10705) murU 2214256..2214945 (-) 690 WP_087605557.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  KAN02_RS10710 (KAN02_10710) - 2214945..2215958 (-) 1014 WP_087605556.1 aminoglycoside phosphotransferase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23188.09 Da        Isoelectric Point: 6.9795

>NTDB_id=306676 KAN02_RS10685 WP_087605558.1 2211163..2211798(-) (exbB) [Acinetobacter nosocomialis strain KAN02]
MWELVKAGGWLMLPLILCSILTVAISIERFIRLRRSQVLPKLLMSDGSADVSHIITNLEQDTAAQNTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQNYIAELEQQSTLFHASLFYKRSSVVQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=306676 KAN02_RS10685 WP_087605558.1 2211163..2211798(-) (exbB) [Acinetobacter nosocomialis strain KAN02]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACGGTCGCTATTAGTAT
TGAGCGTTTTATACGTTTAAGACGTTCACAAGTTTTGCCCAAATTACTGATGAGTGATGGTAGTGCAGATGTTTCTCATA
TCATCACAAATTTGGAGCAGGATACTGCTGCCCAAAACACAGCATTAGGAAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAGCATGGTGAGCAGTTTGCTCGAGCACAAATGGAAGCAATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
TTTCTTGGGAACTTTAAGTGCGATTGCACCATTACTTGGGTTGCTTGGGACAGTTGTAGGGATTATTGAGTCTTTTCTAG
TGATTGATTTTGGTTCGGCAGGTAGTCCAAGTCTAATGATTCCGGGTATTTCAAAAGCCCTAATTACGACCGCCGTTGGT
ATGCTCATTGCAATTCCTGCTCTTATTTCATATCGCTATTTTCAAAGAGTAGTGCAAAACTACATTGCGGAATTAGAGCA
ACAATCTACACTCTTTCATGCATCATTGTTTTATAAACGTTCTTCTGTTGTGCAAGAACATCGCCGTGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(65-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

41.509

100

0.417

Multiple sequence alignment