Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   DXX91_RS07600 Genome accession   NZ_CP031424
Coordinates   1421659..1421943 (+) Length   94 a.a.
NCBI ID   WP_024085249.1    Uniprot ID   -
Organism   Bacillus velezensis strain B-4     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1416659..1426943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXX91_RS07575 - 1417906..1418814 (+) 909 WP_115996285.1 ketopantoate reductase family protein -
  DXX91_RS07580 - 1418844..1420076 (-) 1233 WP_102421870.1 aminopeptidase -
  DXX91_RS07585 - 1420177..1420311 (-) 135 WP_003154559.1 protein YkpC -
  DXX91_RS07590 mreBH 1420383..1421390 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  DXX91_RS07600 abrB 1421659..1421943 (+) 285 WP_024085249.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  DXX91_RS07605 - 1422116..1423420 (+) 1305 WP_014304932.1 ATP-binding protein -
  DXX91_RS07610 - 1423422..1424249 (+) 828 WP_003154555.1 gamma-glutamylcyclotransferase family protein -
  DXX91_RS07615 ktrC 1424290..1424955 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  DXX91_RS07620 ade 1425104..1426837 (+) 1734 WP_115996286.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10574.41 Da        Isoelectric Point: 5.2271

>NTDB_id=306675 DXX91_RS07600 WP_024085249.1 1421659..1421943(+) (abrB) [Bacillus velezensis strain B-4]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=306675 DXX91_RS07600 WP_024085249.1 1421659..1421943(+) (abrB) [Bacillus velezensis strain B-4]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGCGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACCGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAAGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543

Multiple sequence alignment