Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   DXX91_RS01960 Genome accession   NZ_CP031424
Coordinates   380400..381353 (+) Length   317 a.a.
NCBI ID   WP_115996115.1    Uniprot ID   -
Organism   Bacillus velezensis strain B-4     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 375400..386353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXX91_RS01930 - 375444..376877 (+) 1434 WP_161625271.1 HAMP domain-containing sensor histidine kinase -
  DXX91_RS01935 rapC 377030..378178 (+) 1149 WP_014304340.1 Rap family tetratricopeptide repeat protein Regulator
  DXX91_RS01940 phrC 378162..378281 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  DXX91_RS01945 - 378431..378526 (-) 96 WP_012116800.1 YjcZ family sporulation protein -
  DXX91_RS01950 - 378621..379985 (-) 1365 WP_014304341.1 aspartate kinase -
  DXX91_RS01960 ceuB 380400..381353 (+) 954 WP_115996115.1 ABC transporter permease Machinery gene
  DXX91_RS01965 - 381343..382290 (+) 948 WP_003156331.1 iron chelate uptake ABC transporter family permease subunit -
  DXX91_RS01970 - 382284..383042 (+) 759 WP_003156330.1 ABC transporter ATP-binding protein -
  DXX91_RS01975 - 383064..384008 (+) 945 WP_003156329.1 siderophore ABC transporter substrate-binding protein -
  DXX91_RS01980 - 384050..385471 (-) 1422 WP_014304342.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34959.26 Da        Isoelectric Point: 9.6741

>NTDB_id=306655 DXX91_RS01960 WP_115996115.1 380400..381353(+) (ceuB) [Bacillus velezensis strain B-4]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQAGTLFDSRLPRLVSIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLVKMSIAFIFALAGNFLFMKIIERIKFNDAIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=306655 DXX91_RS01960 WP_115996115.1 380400..381353(+) (ceuB) [Bacillus velezensis strain B-4]
ATGAAGCTACGTTACTTACTTTTGCTACTGGCGGTTTTGGCGTGTACTTCTATATTTATCGGTGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCAGGTACATTGTTTGACAGCCGGCTGCCGCGTTTGGTGAGCATTATCA
TCGCCGGCATGAGCCTGAGCATCTGCGGATTAATCATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCGACGACTGCG
GGAACGATGGACTGGGCAAGGCTCGGAATTTTGATTTCATTAATGCTTTTTACGTCAGCGAGCCCGCTTGTGAAAATGTC
TATCGCTTTTATTTTCGCGTTGGCGGGAAATTTCCTTTTCATGAAAATCATCGAGAGAATCAAGTTCAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAACATCGTCAGCTCAATCGCCACGTTTATCGCATATAAATACGACCTGATC
CAAAACCTGTCATCTTGGCTGCAGGGAGATTTCTCACTGGTCGTTAAAGGCCGGTATGAGCTTTTATATCTGAGTATCCC
GCTGGTGATCATCGCTTATGTGTATGCGGATAAATTTACGGTGGCGGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTCAATATCGGTCTGATTATCGTGTCGCTCATCGCTTCACTGGTGATCCTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCCAATATGGTGTCGATTTACAAAGGGGACAACCTGAGGAGCAGCCTGCCTCACAC
AGCTCTCTTGGGCGCTGTTTTTGTGCTGTTTTGCGATATTTTGGGAAGGGTGATCATCTTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTTATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.165

99.685

0.53

Multiple sequence alignment