Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   KAN02_RS03320 Genome accession   NZ_CP036171
Coordinates   685758..686273 (-) Length   171 a.a.
NCBI ID   WP_087606397.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain KAN02     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 680758..691273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KAN02_RS03295 (KAN02_03295) - 681300..682943 (+) 1644 WP_004712033.1 nitrite/sulfite reductase -
  KAN02_RS03300 (KAN02_03300) - 682936..683421 (+) 486 WP_002051429.1 DUF934 domain-containing protein -
  KAN02_RS03305 (KAN02_03305) - 683500..683853 (+) 354 WP_087606394.1 DMT family transporter -
  KAN02_RS03310 (KAN02_03310) - 683906..684349 (-) 444 WP_002051396.1 VOC family protein -
  KAN02_RS03315 (KAN02_03315) - 684475..685649 (-) 1175 Protein_629 thiolase family protein -
  KAN02_RS03320 (KAN02_03320) fimT 685758..686273 (-) 516 WP_087606397.1 GspH/FimT family pseudopilin Machinery gene
  KAN02_RS03325 (KAN02_03325) omp38 686653..687681 (+) 1029 WP_087606398.1 outer membrane protein Omp38 -
  KAN02_RS19000 - 687809..687967 (-) 159 WP_165395674.1 hypothetical protein -
  KAN02_RS03330 (KAN02_03330) - 687971..689176 (-) 1206 WP_087606399.1 RtcB family protein -
  KAN02_RS03335 (KAN02_03335) - 689453..690913 (-) 1461 WP_002051328.1 amino acid permease -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19410.60 Da        Isoelectric Point: 8.8332

>NTDB_id=306653 KAN02_RS03320 WP_087606397.1 685758..686273(-) (fimT) [Acinetobacter nosocomialis strain KAN02]
MFRSPGFTIVELSITLVILVIMSVIAIPLYHQFMASVELKNTSRVLTIHIQKAKSDAIIQHKNIVLCPSSDQVICNTDWN
KHLISFVDSNRNLKHDLNEELLTSIDLNHTYGSMKLQRFGKKQNSIVFQGSSGLPIESNGSFIYCSYDQLKNFKLVLSKM
GHVRVEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=306653 KAN02_RS03320 WP_087606397.1 685758..686273(-) (fimT) [Acinetobacter nosocomialis strain KAN02]
ATGTTTAGATCTCCTGGTTTTACTATAGTTGAGCTCTCTATAACCCTCGTAATTCTTGTGATTATGTCAGTTATAGCTAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAATTAAAAAATACTTCGCGTGTACTCACAATTCATATACAAAAAGCCA
AATCAGACGCAATTATTCAGCATAAGAACATTGTTCTGTGTCCAAGTTCAGATCAGGTAATCTGTAATACAGATTGGAAT
AAACACTTAATCAGCTTCGTAGATAGTAACCGCAATCTAAAGCATGATTTAAATGAAGAATTATTAACCTCTATAGATCT
TAACCATACTTATGGTTCTATGAAATTACAACGTTTTGGTAAAAAACAAAATAGTATTGTATTTCAAGGAAGCTCGGGAC
TTCCAATCGAGTCTAATGGTAGTTTTATTTACTGTTCTTATGATCAGCTTAAAAATTTTAAATTAGTTCTTAGCAAAATG
GGGCATGTGCGTGTCGAAGAATTGAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(49-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.976

97.076

0.427

Multiple sequence alignment