Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   EXT04_RS08885 Genome accession   NZ_CP035944
Coordinates   1850185..1851612 (-) Length   475 a.a.
NCBI ID   WP_000980615.1    Uniprot ID   -
Organism   Escherichia coli strain AR24.2b     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1845185..1856612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXT04_RS08855 (EXT04_08885) yeeY 1845569..1846498 (+) 930 WP_000803370.1 LysR substrate-binding domain-containing protein -
  EXT04_RS08860 (EXT04_08890) yoeI 1846713..1846775 (+) 63 WP_010723108.1 membrane protein YoeI -
  EXT04_RS08865 (EXT04_08895) plaP 1846765..1848123 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  EXT04_RS08875 (EXT04_08905) tsuA 1848942..1849901 (+) 960 Protein_1733 YeeE/YedE family protein -
  EXT04_RS08880 (EXT04_08910) tsuB 1849915..1850142 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  EXT04_RS08885 (EXT04_08915) sbcB 1850185..1851612 (-) 1428 WP_000980615.1 exodeoxyribonuclease I Machinery gene
  EXT04_RS08890 (EXT04_08920) dacD 1851821..1852987 (+) 1167 WP_046660321.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  EXT04_RS08895 (EXT04_08925) sbmC 1853106..1853579 (+) 474 WP_001105385.1 DNA gyrase inhibitor SbmC -
  EXT04_RS08900 (EXT04_08930) yeeA 1853778..1854836 (+) 1059 WP_137675751.1 FUSC family protein -
  EXT04_RS08905 (EXT04_08935) tmaR 1855008..1855337 (+) 330 WP_000450409.1 DUF496 family protein -
  EXT04_RS23095 - 1855438..1855803 (-) 366 WP_001282181.1 EutP/PduV family microcompartment system protein -
  EXT04_RS22950 - 1856074..1856463 (-) 390 WP_001445118.1 IS110 family transposase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54444.71 Da        Isoelectric Point: 5.4700

>NTDB_id=306589 EXT04_RS08885 WP_000980615.1 1850185..1851612(-) (sbcB) [Escherichia coli strain AR24.2b]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLSGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=306589 EXT04_RS08885 WP_000980615.1 1850185..1851612(-) (sbcB) [Escherichia coli strain AR24.2b]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGTCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACTGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583

Multiple sequence alignment