Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   EXT04_RS05595 Genome accession   NZ_CP035944
Coordinates   1137888..1138403 (+) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli strain AR24.2b     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1132888..1143403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXT04_RS05550 (EXT04_05575) csrA 1133475..1133660 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  EXT04_RS05580 (EXT04_05605) yqaB 1135118..1135684 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  EXT04_RS05585 (EXT04_05610) yqaA 1135681..1136109 (+) 429 WP_001287457.1 YqaA family protein -
  EXT04_RS05590 (EXT04_05615) gshA 1136182..1137738 (+) 1557 WP_000611802.1 glutamate--cysteine ligase -
  EXT04_RS05595 (EXT04_05620) luxS 1137888..1138403 (+) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  EXT04_RS05600 (EXT04_05625) emrB 1138467..1140005 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  EXT04_RS05605 (EXT04_05630) emrA 1140022..1141194 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  EXT04_RS05610 (EXT04_05635) emrR 1141321..1141851 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  EXT04_RS05615 (EXT04_05640) ygaH 1141942..1142277 (-) 336 WP_000119750.1 L-valine transporter subunit YgaH -
  EXT04_RS05620 (EXT04_05645) ygaZ 1142267..1143004 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=306579 EXT04_RS05595 WP_001130207.1 1137888..1138403(+) (luxS) [Escherichia coli strain AR24.2b]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=306579 EXT04_RS05595 WP_001130207.1 1137888..1138403(+) (luxS) [Escherichia coli strain AR24.2b]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAATGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731