Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DWF74_RS11440 Genome accession   NZ_CP031396
Coordinates   2574714..2576081 (-) Length   455 a.a.
NCBI ID   WP_025129215.1    Uniprot ID   -
Organism   Pseudomonas protegens strain FD6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2569714..2581081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DWF74_RS11415 (DWF74_11415) yjiA 2569914..2570885 (-) 972 WP_102865429.1 GTPase -
  DWF74_RS11420 (DWF74_11420) - 2571000..2571197 (-) 198 WP_007937254.1 YbdD/YjiX family protein -
  DWF74_RS11425 (DWF74_11425) - 2571214..2573280 (-) 2067 WP_102865428.1 carbon starvation CstA family protein -
  DWF74_RS11430 (DWF74_11430) - 2573567..2573935 (+) 369 WP_115580976.1 PilZ domain-containing protein -
  DWF74_RS11435 (DWF74_11435) - 2573952..2574674 (-) 723 WP_115582439.1 hypothetical protein -
  DWF74_RS11440 (DWF74_11440) radA 2574714..2576081 (-) 1368 WP_025129215.1 DNA repair protein RadA Machinery gene
  DWF74_RS11445 (DWF74_11445) - 2576127..2576687 (-) 561 WP_115580977.1 ankyrin repeat domain-containing protein -
  DWF74_RS11450 (DWF74_11450) katB 2576755..2578296 (-) 1542 WP_115580978.1 catalase KatB -
  DWF74_RS11455 (DWF74_11455) mscL 2578584..2578997 (+) 414 WP_102865424.1 large-conductance mechanosensitive channel protein MscL -
  DWF74_RS11460 (DWF74_11460) - 2579047..2579823 (-) 777 WP_102865423.1 ferredoxin--NADP reductase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48756.27 Da        Isoelectric Point: 7.1317

>NTDB_id=306536 DWF74_RS11440 WP_025129215.1 2574714..2576081(-) (radA) [Pseudomonas protegens strain FD6]
MAKAKRMYGCTECGSTFPKWAGQCGECGAWNTLTETMIESGGAAAPAGRTGWAGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIATRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARVEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKESPPGLKIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=306536 DWF74_RS11440 WP_025129215.1 2574714..2576081(-) (radA) [Pseudomonas protegens strain FD6]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCTCCACCTTTCCCAAATGGGCCGGGCAATGCGGTGAGTG
CGGGGCCTGGAACACCCTGACCGAGACCATGATCGAAAGTGGCGGCGCCGCGGCACCTGCCGGGCGCACCGGCTGGGCCG
GGCAGCAGGCGCAGATCAAGACCCTGGCGGAAGTCAGCGTCGAGGAAATCCCGCGTTTCTCCACTGCCTCCGGCGAACTC
GACCGGGTGCTGGGCGGTGGCCTGGTGGACGGATCGGTGGTGCTGATCGGCGGCGATCCGGGGATCGGCAAGTCGACCAT
CCTGCTGCAGACCCTGTGCAACATCGCCACGCGCATGCCGGCCTTGTACGTCACCGGCGAGGAGTCCCAGCAGCAGGTAG
CGATGCGCGCCCGGCGGTTGGGCCTGCCCCAGGATCAGTTACGGGTGATGACCGAGACCTGCATCGAAACCATCATCGCC
ACCGCTCGGGTGGAAAAACCCAAGGTCATGGTGATCGACTCGATCCAGACCATCTTCACCGAACAGCTGCAATCGGCTCC
CGGCGGCGTGTCCCAGGTGCGCGAGAGCGCGGCCTTGCTGGTGCGTTACGCCAAGCAGAGCGGCACGGCGATCTTCCTGG
TGGGCCACGTGACCAAGGAAGGCGCCCTGGCCGGGCCGCGGGTGCTGGAGCACATGGTCGACACCGTGCTGTATTTCGAG
GGCGAGTCCGACGGCCGCCTGCGGTTGCTGCGGGCGGTGAAGAACCGTTTTGGTGCGGTCAACGAGCTGGGTGTGTTCGG
CATGACCGACCGCGGTCTGAAGGAGGTGTCCAACCCTTCGGCGATTTTCCTCACACGAGCTCAGGAAGAAGTGCCCGGCA
GCGTGGTGATGGCCACCTGGGAAGGCACCCGGCCGATGCTGGTTGAAGTCCAGGCGCTGGTGGATGACAGCCACCTGGCC
AATCCGCGCCGGGTCACCCTGGGCCTGGATCAGAACCGCCTGGCCATGCTGCTGGCGGTGCTGCACCGCCACGGCGGGAT
TCCGACCCATGACCAGGACGTGTTCCTCAACGTGGTGGGTGGGGTCAAGGTGCTGGAAACCGCCTCCGACCTGGCGTTGA
TGGCCGCCGTGATGTCGAGCTTGCGCAATCGTCCGCTGCCCCATGACTTGCTGGTGTTCGGTGAAGTCGGCCTGTCCGGT
GAAGTGCGTCCGGTGCCCAGCGGCCAGGAGCGTTTGAAAGAGGCCGCCAAGCACGGCTTCAAACGGGCCATCGTGCCCAA
GGGCAATGCGCCGAAAGAGTCGCCGCCGGGCTTGAAGATCATTGCCGTGACCCGCCTGGAACAGGCGTTGGATGCGCTCT
TCGAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(80-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.234

100

0.495
  radA Streptococcus mitis SK321

46.053

100

0.462
  radA Streptococcus mitis NCTC 12261

45.833

100

0.459
  radA Streptococcus pneumoniae Rx1

45.833

100

0.459
  radA Streptococcus pneumoniae D39

45.833

100

0.459
  radA Streptococcus pneumoniae R6

45.833

100

0.459
  radA Streptococcus pneumoniae TIGR4

45.833

100

0.459

Multiple sequence alignment