Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CCO2228_RS05910 Genome accession   NZ_CP035927
Coordinates   1157486..1157980 (+) Length   164 a.a.
NCBI ID   WP_002777353.1    Uniprot ID   A0ABP2NQV1
Organism   Campylobacter coli strain RM2228     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1152486..1162980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCO2228_RS05895 (CCO2228_1151) - 1153864..1155045 (-) 1182 WP_002777347.1 metal-dependent hydrolase -
  CCO2228_RS05900 (CCO2228_1152) - 1155054..1155953 (-) 900 WP_002777349.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  CCO2228_RS05905 (CCO2228_1153) gatB 1155953..1157371 (-) 1419 WP_002777351.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  CCO2228_RS05910 (CCO2228_1154) luxS 1157486..1157980 (+) 495 WP_002777353.1 S-ribosylhomocysteine lyase Regulator
  CCO2228_RS05920 (CCO2228_1155) - 1158297..1159289 (+) 993 WP_002777355.1 isopenicillin N synthase family oxygenase -
  CCO2228_RS05925 (CCO2228_1156) - 1159303..1160073 (+) 771 WP_002781303.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  CCO2228_RS05930 (CCO2228_1157) metE 1160096..1162360 (+) 2265 WP_002777360.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18312.23 Da        Isoelectric Point: 5.2464

>NTDB_id=306532 CCO2228_RS05910 WP_002777353.1 1157486..1157980(+) (luxS) [Campylobacter coli strain RM2228]
MPLLDSFKVDHTKMPAPAVRLAKTMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSDLVEIIDISP
MGCRTGFYMSLIGIPDEKSVAKAWEAAMKDILNVSNQSQIPELNIYQCGTCAMHSLDEAKEIAQKVLNSTIGVMNNEELK
LENI

Nucleotide


Download         Length: 495 bp        

>NTDB_id=306532 CCO2228_RS05910 WP_002777353.1 1157486..1157980(+) (luxS) [Campylobacter coli strain RM2228]
ATGCCATTACTTGATAGTTTTAAAGTAGATCATACCAAAATGCCAGCACCCGCTGTGCGTTTAGCTAAAACAATGAAGAC
ACCAAAAGGCGATGATATTAGCGTATTTGACTTGCGTTTTTGCATACCCAATAAAGACATCATGAGTGAAAAAGGTACGC
ATACACTAGAACACTTATTTGCAGGTTTTATGAGAGATCATTTAAATTCGGATTTGGTTGAAATCATCGACATTTCGCCT
ATGGGATGTCGCACAGGTTTTTATATGAGTTTAATTGGCATACCTGATGAAAAAAGTGTGGCCAAGGCTTGGGAAGCTGC
AATGAAAGATATTTTAAATGTGAGCAATCAAAGTCAAATTCCTGAACTCAATATCTATCAATGTGGAACTTGTGCTATGC
ATTCTTTGGATGAAGCAAAAGAAATTGCACAAAAAGTTTTAAATTCTACCATAGGCGTAATGAACAACGAAGAATTAAAA
CTTGAAAATATCTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.671

98.171

0.713