Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   CCO2228_RS05680 Genome accession   NZ_CP035927
Coordinates   1112583..1113527 (+) Length   314 a.a.
NCBI ID   WP_002777230.1    Uniprot ID   -
Organism   Campylobacter coli strain RM2228     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1107583..1118527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCO2228_RS05650 (CCO2228_1105) - 1108718..1109653 (-) 936 WP_002777223.1 glycosyltransferase family 2 protein -
  CCO2228_RS05655 (CCO2228_1106) - 1109734..1110534 (-) 801 WP_002777224.1 class I SAM-dependent methyltransferase -
  CCO2228_RS09050 - 1110662..1110987 (+) 326 Protein_1097 alpha-2,3-sialyltransferase -
  CCO2228_RS09055 - 1110960..1111220 (+) 261 WP_265174491.1 alpha-2,3-sialyltransferase -
  CCO2228_RS09120 - 1111217..1111363 (+) 147 WP_168848228.1 hypothetical protein -
  CCO2228_RS05675 (CCO2228_1107) - 1111703..1112524 (-) 822 WP_002777229.1 glycosyltransferase family 2 protein -
  CCO2228_RS05680 (CCO2228_1108) waaF 1112583..1113527 (+) 945 WP_002777230.1 lipopolysaccharide heptosyltransferase II Regulator
  CCO2228_RS05685 (CCO2228_1109) - 1113520..1114281 (-) 762 WP_002777231.1 glycosyltransferase family 25 protein -
  CCO2228_RS05690 (CCO2228_1110) gmhA 1114281..1114841 (-) 561 WP_002777232.1 D-sedoheptulose 7-phosphate isomerase -
  CCO2228_RS05695 (CCO2228_1111) rfaE1 1114838..1116223 (-) 1386 WP_048813179.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  CCO2228_RS05700 (CCO2228_1112) rfaD 1116216..1117169 (-) 954 WP_002777234.1 ADP-glyceromanno-heptose 6-epimerase -
  CCO2228_RS05705 (CCO2228_1113) - 1117166..1117729 (-) 564 WP_002777235.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -
  CCO2228_RS05710 (CCO2228_1114) - 1117806..1118105 (+) 300 WP_002777238.1 cytochrome c -
  CCO2228_RS05715 (CCO2228_1115) - 1118135..1118335 (-) 201 WP_002777240.1 cbb3-type cytochrome oxidase assembly protein -

Sequence

Protein


Download         Length: 314 a.a.        Molecular weight: 36065.60 Da        Isoelectric Point: 10.2686

>NTDB_id=306530 CCO2228_RS05680 WP_002777230.1 1112583..1113527(+) (waaF) [Campylobacter coli strain RM2228]
MKVFIHLPTWLGDAVMASPALYGVYHYFKNAEFILYGSFVSTALFKEFPNAKIIVENKKSRYKQALSLRKKLGKIDLALS
FRSALSSKIILHILKVKQRYFFNKYDFKEEHQVLKYLYFIENSLEIKAHSKDLKLPFKLKFQNPIVLKNGKKILGLNPGA
SFGSAKRWDASYFAQVALNFSKTHEILIFGAGKAEQELCDEIFHILKEKNVKVKNLCNKTTIKTLCQNIVFCDIFITNDS
GPMHIAAAYKTKTIAIFGPTKFTQTSPWQNQNAKLVHLNLSCMPCMQKTCPLKHHRCMKDLKPEKILEAIQNFT

Nucleotide


Download         Length: 945 bp        

>NTDB_id=306530 CCO2228_RS05680 WP_002777230.1 1112583..1113527(+) (waaF) [Campylobacter coli strain RM2228]
ATGAAAGTTTTTATCCATCTTCCCACTTGGCTAGGCGATGCAGTCATGGCCTCACCTGCTTTATATGGAGTTTATCATTA
TTTTAAAAATGCTGAATTTATCCTTTATGGATCTTTTGTATCTACAGCGCTTTTTAAGGAATTTCCTAATGCTAAAATCA
TTGTAGAAAATAAAAAATCACGCTACAAACAAGCCCTTTCTTTACGCAAAAAACTTGGAAAAATCGATCTAGCCCTTTCT
TTTAGATCAGCCCTTTCCTCTAAGATCATTTTACACATCCTTAAGGTAAAACAAAGATATTTTTTTAACAAATATGATTT
TAAAGAAGAACATCAGGTTTTAAAATATCTTTATTTTATAGAAAATTCATTAGAAATTAAAGCTCATTCTAAGGATTTAA
AACTTCCTTTTAAATTAAAATTTCAAAATCCTATTGTTTTAAAAAATGGCAAAAAAATCCTAGGATTAAACCCTGGAGCG
AGTTTTGGAAGTGCTAAAAGATGGGATGCGAGCTATTTTGCACAAGTTGCTTTAAATTTTAGCAAAACTCATGAAATTTT
GATTTTTGGAGCAGGTAAAGCAGAACAAGAACTTTGCGATGAAATTTTTCATATACTAAAAGAAAAAAATGTCAAAGTAA
AAAATCTTTGCAATAAAACCACTATCAAAACCCTTTGTCAAAATATCGTTTTTTGTGATATTTTCATCACAAACGATAGC
GGCCCTATGCACATAGCTGCCGCTTATAAAACAAAAACCATAGCTATTTTTGGGCCTACTAAATTTACCCAAACCTCACC
TTGGCAAAATCAAAATGCAAAATTAGTACATCTAAATTTATCTTGCATGCCTTGCATGCAAAAAACCTGTCCTTTAAAAC
ATCATCGGTGCATGAAAGATTTAAAACCGGAAAAAATTTTAGAAGCAATCCAAAATTTTACTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(106-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

83.067

99.682

0.828