Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CCO2228_RS05315 Genome accession   NZ_CP035927
Coordinates   1042018..1042566 (+) Length   182 a.a.
NCBI ID   WP_002777084.1    Uniprot ID   A0ABN0ENS3
Organism   Campylobacter coli strain RM2228     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1037018..1047566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCO2228_RS05290 (CCO2228_1034) rseP 1037132..1038235 (+) 1104 WP_002777070.1 RIP metalloprotease RseP -
  CCO2228_RS08955 - 1038232..1038483 (+) 252 WP_048813181.1 hypothetical protein -
  CCO2228_RS05295 (CCO2228_1035) - 1038447..1039088 (+) 642 Protein_1023 DUF535 family protein -
  CCO2228_RS05300 (CCO2228_1036) - 1039081..1040082 (-) 1002 WP_002777078.1 sugar phosphate isomerase/epimerase -
  CCO2228_RS05305 (CCO2228_1037) - 1040082..1041353 (-) 1272 WP_002777080.1 MFS transporter -
  CCO2228_RS05310 (CCO2228_1038) rpsF 1041632..1042009 (+) 378 WP_002777082.1 30S ribosomal protein S6 -
  CCO2228_RS05315 (CCO2228_1039) ssb 1042018..1042566 (+) 549 WP_002777084.1 single-stranded DNA-binding protein Machinery gene
  CCO2228_RS05320 (CCO2228_1040) rpsR 1042577..1042837 (+) 261 WP_002777087.1 30S ribosomal protein S18 -
  CCO2228_RS05325 (CCO2228_1041) lon 1042893..1045268 (-) 2376 WP_002777089.1 endopeptidase La -
  CCO2228_RS05330 (CCO2228_1042) - 1045284..1045931 (-) 648 WP_002777091.1 outer membrane protein assembly factor BamD -
  CCO2228_RS05335 (CCO2228_1043) fliW 1046095..1046484 (+) 390 WP_002777093.1 flagellar assembly protein FliW -
  CCO2228_RS05340 (CCO2228_1044) proC 1046484..1047221 (+) 738 WP_002787902.1 pyrroline-5-carboxylate reductase Machinery gene
  CCO2228_RS05345 (CCO2228_1045) ctsT 1047218..1047523 (+) 306 WP_002777852.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20733.61 Da        Isoelectric Point: 4.8501

>NTDB_id=306525 CCO2228_RS05315 WP_002777084.1 1042018..1042566(+) (ssb) [Campylobacter coli strain RM2228]
MFNKVVLVGNLTRDIEMRYGQNGNAIGASAIAVTRRFTTNGERREETCFIDISFYGRTAEVANQYLSKGSKVLIEGRLRF
EQWNDQNGQMRSKHSVQVENMEMLGNNPQQGGNFNNGGNNYGANNNYSNYENQSYDPYMSENNFKKAPQQAQTKTQNPNQ
NQEKIKEIDVDAYDSDDTDLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=306525 CCO2228_RS05315 WP_002777084.1 1042018..1042566(+) (ssb) [Campylobacter coli strain RM2228]
ATGTTTAATAAAGTTGTTTTGGTAGGTAATCTAACACGCGATATAGAAATGCGTTATGGTCAAAATGGAAACGCTATCGG
AGCTTCGGCTATCGCAGTAACAAGAAGGTTTACCACAAATGGAGAAAGACGAGAAGAAACTTGCTTTATCGATATTAGCT
TTTATGGTCGTACTGCTGAAGTAGCAAACCAATATCTCTCTAAGGGTTCTAAAGTCCTTATAGAAGGTCGTTTAAGATTT
GAACAATGGAATGATCAAAATGGACAAATGCGCTCTAAGCACAGCGTTCAAGTTGAAAACATGGAAATGCTAGGAAACAA
TCCTCAACAAGGTGGAAATTTTAACAATGGTGGAAATAATTATGGAGCTAATAATAATTATTCAAATTATGAAAACCAAA
GTTACGATCCTTATATGAGTGAAAATAATTTCAAAAAAGCTCCACAGCAAGCACAAACAAAAACACAAAATCCTAACCAA
AACCAAGAAAAAATTAAAGAAATTGATGTTGATGCTTATGATAGCGATGACACCGATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

37.5

100

0.379