Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EW995_RS21065 Genome accession   NZ_CP035884
Coordinates   4421667..4422143 (+) Length   158 a.a.
NCBI ID   WP_001391468.1    Uniprot ID   -
Organism   Escherichia coli strain LSN03-016011/A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4416667..4427143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW995_RS21035 - 4416908..4417978 (+) 1071 WP_074573738.1 patatin-like phospholipase family protein -
  EW995_RS21040 - 4418113..4418655 (+) 543 WP_001391476.1 hypothetical protein -
  EW995_RS21045 - 4419092..4419580 (+) 489 Protein_4133 hypothetical protein -
  EW995_RS21050 - 4419682..4419918 (+) 237 WP_032245254.1 DUF905 family protein -
  EW995_RS21055 - 4420018..4420836 (+) 819 WP_001234729.1 DUF932 domain-containing protein -
  EW995_RS21060 - 4421178..4421651 (+) 474 WP_001391480.1 antirestriction protein -
  EW995_RS21065 radC 4421667..4422143 (+) 477 WP_001391468.1 RadC family protein Machinery gene
  EW995_RS21070 - 4422206..4422427 (+) 222 WP_000692291.1 DUF987 domain-containing protein -
  EW995_RS21075 - 4422446..4423089 (+) 644 Protein_4139 antitoxin of toxin-antitoxin stability system -
  EW995_RS21080 - 4423139..4423507 (+) 369 WP_024169392.1 type IV toxin-antitoxin system YeeU family antitoxin -
  EW995_RS21085 - 4423597..4423974 (+) 378 WP_001391462.1 TA system toxin CbtA family protein -
  EW995_RS21090 - 4423971..4424459 (+) 489 WP_001391459.1 DUF5983 family protein -
  EW995_RS21095 - 4424476..4424673 (+) 198 WP_001391464.1 DUF957 domain-containing protein -
  EW995_RS21100 - 4424758..4425600 (+) 843 WP_001340503.1 DUF4942 domain-containing protein -
  EW995_RS21110 ghrA 4426072..4427010 (+) 939 WP_000351311.1 glyoxylate/hydroxypyruvate reductase GhrA -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17690.36 Da        Isoelectric Point: 7.1437

>NTDB_id=306503 EW995_RS21065 WP_001391468.1 4421667..4422143(+) (radC) [Escherichia coli strain LSN03-016011/A]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGMVDIRVPDHLIVGGSQVFSFAEYGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=306503 EW995_RS21065 WP_001391468.1 4421667..4422143(+) (radC) [Escherichia coli strain LSN03-016011/A]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTTCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCAGACCGCCTTATCACGGAACGCCTGGTACAGGCACTGGGCATGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAATATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment