Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EW995_RS20515 Genome accession   NZ_CP035884
Coordinates   4304721..4305350 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain LSN03-016011/A     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4299721..4310350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW995_RS20495 ycbZ 4300110..4301870 (-) 1761 WP_000156526.1 Lon protease family protein -
  EW995_RS20500 matP 4302056..4302508 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  EW995_RS20505 ompA 4302584..4303636 (-) 1053 WP_001361736.1 porin OmpA -
  EW995_RS20510 sulA 4303993..4304502 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  EW995_RS20515 sxy/tfoX 4304721..4305350 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  EW995_RS20520 yccS 4305313..4307475 (-) 2163 WP_000875044.1 YccS family putative transporter -
  EW995_RS20525 yccF 4307485..4307931 (-) 447 WP_001261235.1 YccF domain-containing protein -
  EW995_RS20530 helD 4308054..4310108 (+) 2055 WP_000420537.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=306502 EW995_RS20515 WP_000839153.1 4304721..4305350(+) (sxy/tfoX) [Escherichia coli strain LSN03-016011/A]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=306502 EW995_RS20515 WP_000839153.1 4304721..4305350(+) (sxy/tfoX) [Escherichia coli strain LSN03-016011/A]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1