Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   EW995_RS18005 Genome accession   NZ_CP035884
Coordinates   3765114..3765719 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain LSN03-016011/A     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3760114..3770719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW995_RS25420 - 3760668..3760766 (+) 99 Protein_3529 hypothetical protein -
  EW995_RS17975 rsmS 3760819..3760980 (-) 162 WP_000051148.1 pleiotropic regulatory protein RsmS -
  EW995_RS17980 priC 3760994..3761521 (-) 528 WP_000844848.1 primosomal replication protein N'' -
  EW995_RS17985 ybaN 3761591..3761968 (+) 378 WP_001188905.1 DUF454 family protein -
  EW995_RS17990 apt 3762121..3762672 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  EW995_RS17995 dnaX 3762801..3764732 (+) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  EW995_RS18000 ybaB 3764785..3765114 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  EW995_RS18005 recR 3765114..3765719 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  EW995_RS18010 htpG 3765829..3767703 (+) 1875 WP_000678208.1 molecular chaperone HtpG -
  EW995_RS18015 adk 3767884..3768528 (+) 645 WP_001220233.1 adenylate kinase -
  EW995_RS18020 hemH 3768764..3769726 (+) 963 WP_001250088.1 ferrochelatase -
  EW995_RS18025 aes 3769723..3770682 (-) 960 WP_000801846.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=306495 EW995_RS18005 WP_001195025.1 3765114..3765719(+) (recR) [Escherichia coli strain LSN03-016011/A]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=306495 EW995_RS18005 WP_001195025.1 3765114..3765719(+) (recR) [Escherichia coli strain LSN03-016011/A]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment