Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EW995_RS07920 Genome accession   NZ_CP035884
Coordinates   1647098..1647574 (+) Length   158 a.a.
NCBI ID   WP_001186774.1    Uniprot ID   -
Organism   Escherichia coli strain LSN03-016011/A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1642098..1652574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW995_RS07895 - 1642265..1644781 (+) 2517 WP_001315618.1 hypothetical protein -
  EW995_RS07900 - 1644857..1645312 (+) 456 WP_000581504.1 IrmA family protein -
  EW995_RS07905 - 1645391..1645624 (+) 234 WP_001119729.1 DUF905 family protein -
  EW995_RS07910 - 1645724..1646542 (+) 819 WP_001234620.1 DUF932 domain-containing protein -
  EW995_RS07915 - 1646597..1647082 (+) 486 WP_104895190.1 antirestriction protein -
  EW995_RS07920 radC 1647098..1647574 (+) 477 WP_001186774.1 RadC family protein Machinery gene
  EW995_RS07925 - 1647637..1647858 (+) 222 WP_000692345.1 DUF987 domain-containing protein -
  EW995_RS07930 - 1648021..1648395 (+) 375 WP_134737068.1 type IV toxin-antitoxin system YeeU family antitoxin -
  EW995_RS07935 - 1648442..1648819 (+) 378 WP_000854899.1 TA system toxin CbtA family protein -
  EW995_RS07940 - 1648816..1649304 (+) 489 WP_000779174.1 DUF5983 family protein -
  EW995_RS07945 - 1649316..1649513 (+) 198 WP_000839281.1 DUF957 domain-containing protein -
  EW995_RS07950 - 1649610..1650182 (+) 573 WP_001290246.1 DUF4942 domain-containing protein -
  EW995_RS07955 yghD 1650463..1650999 (-) 537 WP_000942786.1 GspM family type II secretion system protein YghD -
  EW995_RS07960 gspL 1651001..1652179 (-) 1179 WP_000094970.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17661.27 Da        Isoelectric Point: 7.2020

>NTDB_id=306450 EW995_RS07920 WP_001186774.1 1647098..1647574(+) (radC) [Escherichia coli strain LSN03-016011/A]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=306450 EW995_RS07920 WP_001186774.1 1647098..1647574(+) (radC) [Escherichia coli strain LSN03-016011/A]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment