Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   EW995_RS06150 Genome accession   NZ_CP035884
Coordinates   1276529..1277044 (-) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli strain LSN03-016011/A     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1271529..1282044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW995_RS06125 ygaZ 1271928..1272665 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  EW995_RS06130 ygaH 1272655..1272990 (+) 336 WP_000119750.1 L-valine transporter subunit YgaH -
  EW995_RS06135 emrR 1273081..1273611 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  EW995_RS06140 emrA 1273738..1274910 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  EW995_RS06145 emrB 1274927..1276465 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  EW995_RS06150 luxS 1276529..1277044 (-) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  EW995_RS06155 gshA 1277194..1278750 (-) 1557 WP_000611802.1 glutamate--cysteine ligase -
  EW995_RS06160 yqaA 1278823..1279251 (-) 429 WP_001287457.1 YqaA family protein -
  EW995_RS06165 yqaB 1279248..1279814 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  EW995_RS06195 csrA 1281272..1281457 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=306443 EW995_RS06150 WP_001130207.1 1276529..1277044(-) (luxS) [Escherichia coli strain LSN03-016011/A]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=306443 EW995_RS06150 WP_001130207.1 1276529..1277044(-) (luxS) [Escherichia coli strain LSN03-016011/A]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAATGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731