Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EW996_RS18070 Genome accession   NZ_CP035882
Coordinates   3709748..3710224 (+) Length   158 a.a.
NCBI ID   WP_074503008.1    Uniprot ID   -
Organism   Escherichia coli strain WS0115A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3704748..3715224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW996_RS18040 - 3705370..3706212 (-) 843 WP_249531169.1 hypothetical protein -
  EW996_RS18045 - 3706319..3707203 (+) 885 WP_053291272.1 GTPase -
  EW996_RS18050 - 3707322..3707999 (+) 678 WP_074504021.1 hypothetical protein -
  EW996_RS18055 - 3708005..3708238 (+) 234 WP_001278281.1 DUF905 family protein -
  EW996_RS18060 - 3708337..3709155 (+) 819 WP_074503010.1 DUF932 domain-containing protein -
  EW996_RS18065 - 3709247..3709732 (+) 486 WP_000206660.1 antirestriction protein -
  EW996_RS18070 radC 3709748..3710224 (+) 477 WP_074503008.1 DNA repair protein RadC Machinery gene
  EW996_RS18075 - 3710293..3710514 (+) 222 WP_000692295.1 DUF987 domain-containing protein -
  EW996_RS18080 - 3710594..3710962 (+) 369 WP_024183700.1 type IV toxin-antitoxin system YeeU family antitoxin -
  EW996_RS18085 - 3711051..3711428 (+) 378 WP_074503007.1 TA system toxin CbtA family protein -
  EW996_RS18090 - 3711425..3711913 (+) 489 WP_074503005.1 DUF5983 family protein -
  EW996_RS18095 - 3711925..3712121 (+) 197 Protein_3582 hypothetical protein -
  EW996_RS18100 - 3712206..3713079 (+) 874 Protein_3583 DUF4942 domain-containing protein -
  EW996_RS18105 - 3713151..3713414 (+) 264 WP_001143297.1 type II toxin-antitoxin system ParD family antitoxin -
  EW996_RS18110 - 3713411..3713737 (+) 327 WP_000779483.1 type II toxin-antitoxin system RelE/ParE family toxin -
  EW996_RS24920 - 3714246..3714360 (+) 115 Protein_3586 integrase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17631.28 Da        Isoelectric Point: 7.6151

>NTDB_id=306394 EW996_RS18070 WP_074503008.1 3709748..3710224(+) (radC) [Escherichia coli strain WS0115A]
MQQLSFLPGAMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVILAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=306394 EW996_RS18070 WP_074503008.1 3709748..3710224(+) (radC) [Escherichia coli strain WS0115A]
ATGCAACAGCTTTCCTTTCTGCCCGGAGCGATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTAGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTACTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTTCATCCCCGGGAAGTGATTAAACGTGCCCTGTACCACAATGCCGCCGCCGTGATACTGGCACA
CAACCACCCGTCCGGTGAAGTCACTCCCAGTAAGGCAGACCGGCTTATTACGGAACGTCTGGTTCAGGCGCTGGCCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTATTCTCCTTTGCCGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

56.637

71.519

0.405

Multiple sequence alignment