Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   EW996_RS13885 Genome accession   NZ_CP035882
Coordinates   2860977..2861582 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain WS0115A     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2855977..2866582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW996_RS13865 aes 2856014..2856973 (+) 960 WP_000801848.1 acetyl esterase -
  EW996_RS13870 hemH 2856970..2857932 (-) 963 WP_001250117.1 ferrochelatase -
  EW996_RS13875 adk 2858168..2858812 (-) 645 WP_001220233.1 adenylate kinase -
  EW996_RS13880 htpG 2858993..2860867 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  EW996_RS13885 recR 2860977..2861582 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  EW996_RS13890 ybaB 2861582..2861911 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  EW996_RS13895 dnaX 2861964..2863895 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  EW996_RS13900 apt 2864024..2864575 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  EW996_RS13905 ybaN 2864728..2865105 (-) 378 WP_001188905.1 DUF454 family protein -
  EW996_RS13910 priC 2865175..2865702 (+) 528 WP_000844874.1 primosomal replication protein N'' -
  EW996_RS13915 rsmS 2865716..2865877 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=306385 EW996_RS13885 WP_001195025.1 2860977..2861582(-) (recR) [Escherichia coli strain WS0115A]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=306385 EW996_RS13885 WP_001195025.1 2860977..2861582(-) (recR) [Escherichia coli strain WS0115A]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment