Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EW996_RS11025 Genome accession   NZ_CP035882
Coordinates   2275606..2276235 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain WS0115A     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2270606..2281235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW996_RS11010 helD 2270848..2272902 (-) 2055 WP_001338439.1 DNA helicase IV -
  EW996_RS11015 yccF 2273025..2273471 (+) 447 WP_001261235.1 YccF domain-containing protein -
  EW996_RS11020 yccS 2273481..2275643 (+) 2163 WP_000875061.1 YccS family putative transporter -
  EW996_RS11025 sxy/tfoX 2275606..2276235 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  EW996_RS11030 sulA 2276454..2276963 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  EW996_RS11035 ompA 2277320..2278360 (+) 1041 WP_000750416.1 porin OmpA -
  EW996_RS11040 matP 2278436..2278888 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  EW996_RS11045 ycbZ 2279074..2280834 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=306378 EW996_RS11025 WP_000839153.1 2275606..2276235(-) (sxy/tfoX) [Escherichia coli strain WS0115A]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=306378 EW996_RS11025 WP_000839153.1 2275606..2276235(-) (sxy/tfoX) [Escherichia coli strain WS0115A]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAT
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment