Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   EW996_RS02475 Genome accession   NZ_CP035882
Coordinates   515170..515685 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain WS0115A     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 510170..520685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW996_RS02435 csrA 510896..511081 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  EW996_RS02460 yqaB 512400..512966 (+) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  EW996_RS02465 yqaA 512963..513391 (+) 429 WP_074503142.1 YqaA family protein -
  EW996_RS02470 gshA 513464..515020 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  EW996_RS02475 luxS 515170..515685 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  EW996_RS02480 emrB 515749..517287 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  EW996_RS02485 emrA 517304..518476 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  EW996_RS02490 emrR 518603..519133 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  EW996_RS02495 ygaH 519224..519559 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  EW996_RS02500 - 519549..520169 (-) 621 WP_216316029.1 AzlC family ABC transporter permease -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=306357 EW996_RS02475 WP_001130211.1 515170..515685(+) (luxS) [Escherichia coli strain WS0115A]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=306357 EW996_RS02475 WP_001130211.1 515170..515685(+) (luxS) [Escherichia coli strain WS0115A]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment