Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   EW997_RS20765 Genome accession   NZ_CP035879
Coordinates   4203582..4204097 (+) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli strain DS26-1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4198582..4209097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW997_RS20720 csrA 4199034..4199219 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  EW997_RS20750 yqaB 4200812..4201378 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  EW997_RS20755 yqaA 4201375..4201803 (+) 429 WP_001287457.1 YqaA family protein -
  EW997_RS20760 gshA 4201876..4203432 (+) 1557 WP_000611802.1 glutamate--cysteine ligase -
  EW997_RS20765 luxS 4203582..4204097 (+) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  EW997_RS20770 emrB 4204161..4205699 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  EW997_RS20775 emrA 4205716..4206888 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  EW997_RS20780 emrR 4207015..4207545 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  EW997_RS20785 ygaH 4207636..4207971 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  EW997_RS20790 ygaZ 4207961..4208698 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=306332 EW997_RS20765 WP_001130207.1 4203582..4204097(+) (luxS) [Escherichia coli strain DS26-1]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=306332 EW997_RS20765 WP_001130207.1 4203582..4204097(+) (luxS) [Escherichia coli strain DS26-1]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAATGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731