Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   ATR_RS05670 Genome accession   NZ_CP031367
Coordinates   1103084..1104925 (-) Length   613 a.a.
NCBI ID   WP_115428509.1    Uniprot ID   A0AAD0VML1
Organism   Aliarcobacter trophiarum LMG 25534     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1098084..1109925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATR_RS05650 (ATR_1138) - 1098205..1098648 (+) 444 WP_115428505.1 hypothetical protein -
  ATR_RS05655 (ATR_1139) - 1098654..1099814 (-) 1161 WP_115428506.1 MalY/PatB family protein -
  ATR_RS05660 (ATR_1140) - 1099855..1101972 (-) 2118 WP_115428507.1 Cache 3/Cache 2 fusion domain-containing protein -
  ATR_RS05665 (ATR_1141) - 1102060..1103091 (-) 1032 WP_115428508.1 alanine racemase -
  ATR_RS05670 (ATR_1142) uvrC 1103084..1104925 (-) 1842 WP_115428509.1 excinuclease ABC subunit UvrC Machinery gene
  ATR_RS05675 (ATR_1143) - 1105044..1107461 (+) 2418 WP_115428510.1 methyl-accepting chemotaxis protein -
  ATR_RS05680 (ATR_1144) - 1107523..1108602 (-) 1080 WP_115428511.1 GIY-YIG nuclease family protein -
  ATR_RS05685 (ATR_1145) - 1108723..1108932 (+) 210 WP_115428512.1 hypothetical protein -

Sequence

Protein


Download         Length: 613 a.a.        Molecular weight: 71343.87 Da        Isoelectric Point: 9.0845

>NTDB_id=306309 ATR_RS05670 WP_115428509.1 1103084..1104925(-) (uvrC) [Aliarcobacter trophiarum LMG 25534]
MNLEDKIKELPKDAGVYQYFDNNGHLLYIGKAKILRNRVKSYFKFTPKLLPADKLSPRIYKMISETTFLEWIIVPNENEA
LILENSLIKQLKPKYNVLLRDDKTYPYIFVDLNEDFPRLEITRKIEKGKNIKYFGPYSSGAKDMLDSIYEIVPLVQKKSC
IKGKSACLFYQIEKCKAPCEGKISKEEYKKLLDEALTYIYNKSKLIARLKEKMKEYSDNFRFEEALNLRDRIKTIEKSQI
KSAIDLATNEDLDIFAIKSIEKRAVLVRMFIRDGKLASSNYDFIKINDILEFDIEEAYKRAIINYYSNEILITPKEIIIA
DDILELDDVEEFLYSKFNKKIRITNPKIDKKATIVKIALSNCDELLRVEASKIETTIYEEIKELFSLQTTPNLIESFDNS
HLMGQATVGAMVVWSEELNSFDKKAFRHYNLESLDEYSQMREMLIRRVDSFLKNPAPDLWIIDGGETLLKLAFDIVQSIG
VNLDIIAISKQKVDAKAYRAKGNAKDIVHFREDGKYKSINLLPSDKRLQFIQRQRDEAHRFAISFHKKQKIKEDKKVSLL
QIGGIGEAKIKKLLLYFGEFEKIKSASLEELKAVLNEADSKKIVDYFKKEEYV

Nucleotide


Download         Length: 1842 bp        

>NTDB_id=306309 ATR_RS05670 WP_115428509.1 1103084..1104925(-) (uvrC) [Aliarcobacter trophiarum LMG 25534]
ATGAATTTAGAAGATAAAATAAAAGAGTTACCAAAGGATGCTGGAGTTTATCAATATTTTGATAATAATGGGCATCTTTT
ATATATTGGAAAAGCAAAGATTCTAAGAAACAGAGTAAAATCTTATTTTAAATTCACTCCAAAACTTCTACCTGCTGATA
AACTAAGTCCAAGAATATATAAAATGATTAGTGAAACTACTTTTTTGGAGTGGATTATTGTTCCAAATGAAAATGAGGCA
CTAATTCTTGAAAACTCTTTAATAAAGCAACTTAAACCAAAATACAATGTACTTTTAAGAGATGATAAGACCTATCCATA
TATTTTTGTAGATTTAAATGAAGATTTCCCGAGACTTGAAATTACAAGAAAGATAGAAAAAGGAAAAAATATAAAGTATT
TTGGACCATACTCAAGTGGAGCAAAAGATATGCTAGATAGCATATATGAGATAGTTCCATTGGTTCAAAAAAAGTCTTGC
ATAAAAGGTAAAAGTGCTTGTCTTTTTTATCAAATAGAAAAATGTAAAGCTCCATGTGAGGGTAAAATAAGTAAAGAAGA
GTATAAAAAACTTTTAGATGAAGCCTTAACTTATATTTATAATAAATCAAAACTTATAGCTAGACTAAAAGAGAAGATGA
AAGAGTATTCAGATAATTTTCGTTTTGAAGAGGCTTTGAATTTAAGAGATAGGATAAAAACTATAGAAAAATCACAAATT
AAGTCAGCTATTGATTTGGCAACAAATGAAGATTTAGATATTTTTGCTATAAAAAGTATTGAAAAAAGAGCTGTTCTTGT
ACGTATGTTTATAAGAGATGGAAAACTTGCCTCTTCAAACTATGATTTCATAAAAATAAATGATATTTTAGAATTTGATA
TTGAAGAAGCTTACAAAAGAGCTATAATAAACTACTATTCAAACGAAATTTTGATAACTCCAAAAGAGATTATTATTGCA
GATGATATATTAGAGTTAGATGATGTTGAAGAGTTTTTATATAGTAAATTTAATAAAAAGATTAGAATAACAAATCCAAA
GATAGATAAAAAAGCGACTATTGTAAAAATTGCTTTAAGTAATTGTGATGAACTTCTAAGAGTTGAAGCTTCAAAAATAG
AGACTACAATTTATGAAGAGATAAAAGAGTTGTTTTCTCTTCAAACAACTCCTAACTTAATAGAGAGTTTTGATAATTCC
CATTTAATGGGACAAGCAACAGTTGGAGCAATGGTTGTTTGGAGTGAAGAGTTAAACTCTTTTGATAAAAAAGCTTTTAG
GCACTATAATCTTGAAAGTTTAGATGAATATTCTCAAATGCGAGAGATGTTAATTAGAAGAGTTGATAGCTTTTTGAAAA
ATCCAGCTCCTGATTTGTGGATTATAGATGGTGGAGAGACTTTGCTAAAACTAGCTTTTGATATTGTACAAAGTATTGGG
GTAAATTTGGATATTATTGCAATTTCAAAACAAAAAGTAGATGCCAAAGCATATAGAGCCAAAGGAAATGCAAAAGATAT
AGTTCATTTTAGAGAAGATGGAAAATATAAGAGTATAAACCTTTTACCTAGTGATAAAAGATTACAATTTATTCAAAGAC
AAAGAGATGAAGCTCATAGATTTGCTATTAGTTTTCATAAAAAACAGAAGATAAAAGAGGATAAAAAGGTTTCACTACTG
CAAATAGGTGGAATAGGAGAGGCAAAAATTAAAAAACTCTTACTATATTTTGGGGAGTTTGAAAAGATTAAAAGTGCAAG
TTTAGAAGAGTTAAAAGCTGTTTTAAATGAAGCTGATTCAAAGAAAATAGTTGATTATTTTAAAAAGGAAGAGTATGTCT
AG

Domains

Predicted by InterproScan.

UvrB/uvrC motif (UVR)

(204-237)

GIY-YIG catalytic domain (GIY-YIG)

(15-96)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(382-543)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

51.51

97.227

0.501

Multiple sequence alignment