Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ATR_RS05380 Genome accession   NZ_CP031367
Coordinates   1043736..1045085 (+) Length   449 a.a.
NCBI ID   WP_115428452.1    Uniprot ID   A0AAD0VM54
Organism   Aliarcobacter trophiarum LMG 25534     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1038736..1050085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATR_RS05360 (ATR_1080) - 1038909..1039475 (+) 567 WP_115428448.1 2-oxoacid:acceptor oxidoreductase family protein -
  ATR_RS05365 (ATR_1081) modD 1039511..1040356 (-) 846 WP_115428449.1 ModD protein -
  ATR_RS05370 (ATR_1082) - 1040360..1040869 (-) 510 WP_115428450.1 hypothetical protein -
  ATR_RS05375 (ATR_1083) polA 1040931..1043615 (-) 2685 WP_115428451.1 DNA polymerase I -
  ATR_RS05380 (ATR_1084) radA 1043736..1045085 (+) 1350 WP_115428452.1 DNA repair protein RadA Machinery gene
  ATR_RS05385 (ATR_1085) - 1045112..1045525 (-) 414 WP_115428453.1 thioesterase family protein -
  ATR_RS05390 (ATR_1086) ybeY 1045592..1046011 (+) 420 WP_115428454.1 rRNA maturation RNase YbeY -
  ATR_RS05395 (ATR_1087) - 1046013..1046420 (-) 408 WP_115428455.1 Fur family transcriptional regulator -
  ATR_RS05400 (ATR_1088) - 1046608..1048179 (+) 1572 WP_115428456.1 endonuclease/exonuclease/phosphatase family protein -
  ATR_RS05405 (ATR_1089) murJ 1048176..1049495 (+) 1320 WP_115428457.1 murein biosynthesis integral membrane protein MurJ -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49412.77 Da        Isoelectric Point: 6.1049

>NTDB_id=306308 ATR_RS05380 WP_115428452.1 1043736..1045085(+) (radA) [Aliarcobacter trophiarum LMG 25534]
MAKKKNTLFECQHCGEQSSKWLGKCPSCDSWDSFIELNEIQQEVLKQTITASSSSSKARPITQIEQDDVLRFSSFNYEFD
LVLGGGVVPGSLTLIGGSPGVGKSTLLLKVAGSIAKSGKKVLYVSGEESAGQIKLRANRLDANHDELFLLSEIKLEEIMS
ELLRENYEVCIIDSIQTIYSSHLNSSPGSVSQVREITFELMRKAKESNIAMFIIGHITKDGSIAGPRVLEHMVDTVLYFE
GEASRELRMLRGFKNRFGSTSEIGIFEMTQEGLVSAKDIASKFFDKSKAQSGSSLTVSMEGSRAIILEVQALVSETTFPN
PKRSATGFDANRLTMLLALLEKKLDLPFNNYDVFINISGGIKIKESSADLAVIAAIISSFRDRPISKESVFIGEVSLTGE
IKDVYSIDLRLKEAQAQGIKKAIIAQKTNLKLDLKTFAVDEVSKMIELF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=306308 ATR_RS05380 WP_115428452.1 1043736..1045085(+) (radA) [Aliarcobacter trophiarum LMG 25534]
ATGGCAAAGAAAAAAAATACTCTATTTGAGTGCCAACACTGTGGTGAACAATCTAGTAAGTGGCTTGGCAAATGTCCTAG
TTGCGACTCTTGGGATAGTTTTATAGAGTTAAATGAAATACAACAAGAGGTTTTAAAGCAGACTATTACAGCTAGTAGTT
CAAGCTCAAAAGCAAGACCAATTACCCAAATAGAGCAAGATGATGTTTTACGATTTTCCTCTTTTAACTATGAATTTGAT
TTAGTCCTAGGTGGTGGAGTTGTTCCAGGAAGTTTAACTTTAATTGGAGGAAGCCCAGGAGTTGGAAAATCTACACTACT
TCTAAAAGTTGCAGGAAGTATTGCAAAAAGTGGGAAAAAGGTACTTTATGTATCAGGAGAAGAGAGTGCTGGACAGATAA
AACTAAGAGCAAATAGATTGGATGCAAATCATGATGAACTTTTTTTATTAAGTGAGATAAAACTTGAAGAGATTATGAGT
GAACTTCTAAGAGAGAATTATGAAGTTTGTATTATTGACTCTATTCAAACAATCTATTCAAGCCACTTAAACTCAAGCCC
TGGAAGTGTTTCCCAAGTTAGAGAGATTACTTTTGAACTAATGAGAAAAGCAAAAGAGTCAAATATTGCTATGTTTATTA
TTGGACATATAACAAAAGATGGAAGTATTGCAGGACCTAGAGTTTTGGAGCATATGGTTGATACAGTTTTGTACTTTGAA
GGTGAAGCAAGTCGTGAATTAAGAATGCTAAGAGGTTTTAAAAACCGTTTTGGAAGTACAAGTGAAATTGGAATTTTTGA
GATGACACAAGAAGGACTTGTGAGTGCAAAAGATATAGCTTCAAAGTTTTTTGATAAAAGCAAAGCCCAAAGTGGATCAA
GTTTAACTGTAAGTATGGAAGGAAGTCGTGCTATTATACTTGAAGTTCAAGCACTTGTTAGTGAGACAACTTTTCCAAAT
CCAAAAAGAAGTGCTACAGGATTTGATGCAAATCGTTTGACTATGCTTCTAGCACTTTTAGAGAAAAAACTAGATCTTCC
TTTTAATAACTATGATGTTTTTATAAATATTAGTGGTGGAATAAAGATTAAAGAAAGTAGTGCAGATTTAGCCGTAATTG
CCGCAATTATCTCAAGCTTTAGAGATAGACCAATCTCAAAAGAGTCTGTTTTTATTGGTGAAGTTAGTTTAACTGGTGAA
ATTAAAGATGTTTATAGCATAGATTTAAGACTTAAAGAGGCTCAAGCACAAGGTATAAAAAAAGCGATTATTGCTCAAAA
AACAAATCTAAAACTAGATTTAAAAACTTTTGCAGTTGATGAAGTCTCGAAAATGATAGAATTATTTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(344-427)

AAA domain (AAA_25)

(85-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.282

95.546

0.49
  radA Streptococcus mitis NCTC 12261

49.188

95.991

0.472
  radA Streptococcus pneumoniae Rx1

49.188

95.991

0.472
  radA Streptococcus pneumoniae D39

49.188

95.991

0.472
  radA Streptococcus pneumoniae R6

49.188

95.991

0.472
  radA Streptococcus pneumoniae TIGR4

49.188

95.991

0.472
  radA Streptococcus mitis SK321

49.188

95.991

0.472

Multiple sequence alignment