Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EW997_RS06160 Genome accession   NZ_CP035879
Coordinates   1162153..1162782 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain DS26-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1157153..1167782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW997_RS06145 helD 1157395..1159449 (-) 2055 WP_000420537.1 DNA helicase IV -
  EW997_RS06150 yccF 1159572..1160018 (+) 447 WP_001261235.1 YccF domain-containing protein -
  EW997_RS06155 yccS 1160028..1162190 (+) 2163 WP_000875044.1 YccS family putative transporter -
  EW997_RS06160 sxy/tfoX 1162153..1162782 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  EW997_RS06165 sulA 1163001..1163510 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  EW997_RS06170 ompA 1163867..1164919 (+) 1053 WP_001361736.1 porin OmpA -
  EW997_RS06175 matP 1164995..1165447 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  EW997_RS06180 ycbZ 1165633..1167393 (+) 1761 WP_097306927.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=306277 EW997_RS06160 WP_000839153.1 1162153..1162782(-) (sxy/tfoX) [Escherichia coli strain DS26-1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=306277 EW997_RS06160 WP_000839153.1 1162153..1162782(-) (sxy/tfoX) [Escherichia coli strain DS26-1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1