Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   EW998_RS18970 Genome accession   NZ_CP035874
Coordinates   3906581..3907186 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain B2C     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3901581..3912186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW998_RS18950 aes 3901618..3902577 (+) 960 WP_000801850.1 acetyl esterase -
  EW998_RS18955 hemH 3902574..3903536 (-) 963 WP_001250088.1 ferrochelatase -
  EW998_RS18960 adk 3903772..3904416 (-) 645 WP_001220233.1 adenylate kinase -
  EW998_RS18965 htpG 3904597..3906471 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  EW998_RS18970 recR 3906581..3907186 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  EW998_RS18975 ybaB 3907186..3907515 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  EW998_RS18980 dnaX 3907568..3909499 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  EW998_RS18985 apt 3909628..3910179 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  EW998_RS18990 ybaN 3910332..3910709 (-) 378 WP_001188905.1 DUF454 family protein -
  EW998_RS18995 priC 3910779..3911306 (+) 528 WP_000844874.1 primosomal replication protein N'' -
  EW998_RS19000 rsmS 3911320..3911481 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=306256 EW998_RS18970 WP_001195025.1 3906581..3907186(-) (recR) [Escherichia coli strain B2C]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=306256 EW998_RS18970 WP_001195025.1 3906581..3907186(-) (recR) [Escherichia coli strain B2C]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443