Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EW998_RS16440 Genome accession   NZ_CP035874
Coordinates   3391453..3391929 (-) Length   158 a.a.
NCBI ID   WP_001186726.1    Uniprot ID   -
Organism   Escherichia coli strain B2C     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3386453..3396929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW998_RS16395 - 3386637..3387479 (-) 843 WP_032323406.1 DUF4942 domain-containing protein -
  EW998_RS16400 - 3387564..3387761 (-) 198 WP_000839253.1 DUF957 domain-containing protein -
  EW998_RS16405 - 3387778..3388266 (-) 489 WP_001054233.1 DUF5983 family protein -
  EW998_RS16410 - 3388263..3388646 (-) 384 WP_000854686.1 TA system toxin CbtA family protein -
  EW998_RS16415 - 3388727..3389107 (-) 381 WP_001285602.1 type IV toxin-antitoxin system YeeU family antitoxin -
  EW998_RS16420 - 3389118..3389492 (-) 375 Protein_3223 antitoxin of the YeeV-YeeU toxin-antitoxin system -
  EW998_RS16425 - 3389668..3390780 (-) 1113 WP_001300563.1 IS4-like element IS421 family transposase -
  EW998_RS16430 - 3390848..3391150 (-) 303 Protein_3225 hypothetical protein -
  EW998_RS16435 - 3391169..3391390 (-) 222 WP_000692298.1 DUF987 domain-containing protein -
  EW998_RS16440 radC 3391453..3391929 (-) 477 WP_001186726.1 RadC family protein Machinery gene
  EW998_RS16445 - 3391945..3392430 (-) 486 WP_000214307.1 antirestriction protein -
  EW998_RS16450 - 3392522..3393340 (-) 819 WP_001234726.1 DUF932 domain-containing protein -
  EW998_RS16455 - 3393440..3393673 (-) 234 WP_001119717.1 DUF905 family protein -
  EW998_RS16460 - 3393752..3394206 (-) 455 Protein_3231 IrmA family protein -
  EW998_RS16465 - 3394282..3396798 (-) 2517 WP_001531238.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17673.32 Da        Isoelectric Point: 7.2020

>NTDB_id=306250 EW998_RS16440 WP_001186726.1 3391453..3391929(-) (radC) [Escherichia coli strain B2C]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=306250 EW998_RS16440 WP_001186726.1 3391453..3391929(-) (radC) [Escherichia coli strain B2C]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACTCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAACTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGCCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392