Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EW998_RS16010 Genome accession   NZ_CP035874
Coordinates   3290570..3291199 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain B2C     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3285570..3296199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW998_RS15995 helD 3285812..3287866 (-) 2055 WP_001295354.1 DNA helicase IV -
  EW998_RS16000 yccF 3287989..3288435 (+) 447 WP_001261235.1 YccF domain-containing protein -
  EW998_RS16005 yccS 3288445..3290607 (+) 2163 WP_000875061.1 YccS family putative transporter -
  EW998_RS16010 sxy/tfoX 3290570..3291199 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  EW998_RS16015 sulA 3291418..3291927 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  EW998_RS16020 ompA 3292284..3293324 (+) 1041 WP_000750416.1 porin OmpA -
  EW998_RS16025 matP 3293400..3293852 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  EW998_RS16030 ycbZ 3294038..3295798 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=306248 EW998_RS16010 WP_000839153.1 3290570..3291199(-) (sxy/tfoX) [Escherichia coli strain B2C]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=306248 EW998_RS16010 WP_000839153.1 3290570..3291199(-) (sxy/tfoX) [Escherichia coli strain B2C]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1