Detailed information
Bioinformatically predicted
Overview
| Name | radC | Type | Machinery gene |
| Locus tag | BWG_RS25050 | Genome accession | NC_012759 |
| Coordinates | 1966815..1967261 (+) | Length | 148 a.a. |
| NCBI ID | WP_000187523.1 | Uniprot ID | P76362 |
| Organism | Escherichia coli BW2952 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1961815..1972261
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BWG_RS09910 (BWG_1791) | agn43 | 1962046..1965165 (+) | 3120 | WP_000820410.1 | autotransporter adhesin Ag43 | - |
| BWG_RS09915 (BWG_1792) | yeeR | 1965286..1966818 (+) | 1533 | WP_001350525.1 | protein YeeR | - |
| BWG_RS25050 (BWG_1793) | radC | 1966815..1967261 (+) | 447 | WP_000187523.1 | RadC family protein | Machinery gene |
| BWG_RS09925 (BWG_1794) | yeeT | 1967324..1967545 (+) | 222 | WP_000692323.1 | DUF987 domain-containing protein | - |
| BWG_RS09930 (BWG_1795) | cbeA | 1967619..1967987 (+) | 369 | WP_001285584.1 | type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA | - |
| BWG_RS09935 (BWG_1796) | cbtA | 1968076..1968450 (+) | 375 | WP_000854814.1 | type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA | - |
| BWG_RS09940 | yeeW | 1968447..1968641 (+) | 195 | WP_000988600.1 | DUF5983 family protein | - |
| BWG_RS25565 | - | 1968687..1968767 (+) | 81 | Protein_1920 | hypothetical protein | - |
| BWG_RS23825 | - | 1969056..1969184 (-) | 129 | Protein_1921 | transposase domain-containing protein | - |
| BWG_RS09950 | - | 1969256..1969438 (+) | 183 | WP_001016348.1 | EutP/PduV family microcompartment system protein | - |
| BWG_RS09955 (BWG_1797) | tmaR | 1969539..1969868 (-) | 330 | WP_000450409.1 | DUF496 family protein | - |
| BWG_RS09960 (BWG_1798) | yeeA | 1970040..1971098 (-) | 1059 | WP_001200891.1 | FUSC family protein | - |
| BWG_RS09965 (BWG_1799) | sbmC | 1971296..1971769 (-) | 474 | WP_001105415.1 | DNA gyrase inhibitor SbmC | - |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 16556.98 Da Isoelectric Point: 7.6151
>NTDB_id=30622 BWG_RS25050 WP_000187523.1 1966815..1967261(+) (radC) [Escherichia coli BW2952]
MTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGTINRTEVHPRE
VIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL
MTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGTINRTEVHPRE
VIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL
Nucleotide
Download Length: 447 bp
>NTDB_id=30622 BWG_RS25050 WP_000187523.1 1966815..1967261(+) (radC) [Escherichia coli BW2952]
ATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGTGGCCTT
CACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATC
TGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACCATCAACCGCACGGAAGTCCATCCCCGGGAA
GTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACACAATCACCCGTCCGGTGAAGTCACACCCAG
TAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGGTGGATATCCGGGTGCCGGACCATCTGATAG
TCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA
ATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGTGGCCTT
CACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATC
TGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACCATCAACCGCACGGAAGTCCATCCCCGGGAA
GTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACACAATCACCCGTCCGGTGAAGTCACACCCAG
TAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGGTGGATATCCGGGTGCCGGACCATCTGATAG
TCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radC | Haemophilus influenzae Rd KW20 |
54.867 |
76.351 |
0.419 |