Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   DXE55_RS05475 Genome accession   NZ_CP031341
Coordinates   1089809..1090438 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli O145 strain RM12275-C1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1084809..1095438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE55_RS05455 (DXE55_05600) ycbZ 1085196..1086956 (-) 1761 WP_000156509.1 Lon protease family protein -
  DXE55_RS05460 (DXE55_05605) matP 1087142..1087594 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  DXE55_RS05465 (DXE55_05610) ompA 1087669..1088724 (-) 1056 WP_000750414.1 porin OmpA -
  DXE55_RS05470 (DXE55_05615) sulA 1089081..1089590 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  DXE55_RS05475 (DXE55_05620) sxy/tfoX 1089809..1090438 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  DXE55_RS05480 (DXE55_05625) yccS 1090401..1092563 (-) 2163 WP_000875041.1 YccS family putative transporter -
  DXE55_RS05485 (DXE55_05630) yccF 1092573..1093019 (-) 447 WP_001261235.1 YccF domain-containing protein -
  DXE55_RS05490 (DXE55_05635) helD 1093142..1095196 (+) 2055 WP_000420536.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=306105 DXE55_RS05475 WP_000839153.1 1089809..1090438(+) (sxy/tfoX) [Escherichia coli O145 strain RM12275-C1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=306105 DXE55_RS05475 WP_000839153.1 1089809..1090438(+) (sxy/tfoX) [Escherichia coli O145 strain RM12275-C1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment