Detailed information    

insolico Bioinformatically predicted

Overview

Name   tpc   Type   Machinery gene
Locus tag   DV160_RS11160 Genome accession   NZ_CP031336
Coordinates   1867697..1868695 (+) Length   332 a.a.
NCBI ID   WP_002221268.1    Uniprot ID   A0AAD2J6P7
Organism   Neisseria meningitidis strain M21717     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 1862697..1873695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV160_RS11125 - 1862914..1863624 (-) 711 WP_002221263.1 uracil-DNA glycosylase family protein -
  DV160_RS11135 rsmA 1863821..1864600 (+) 780 WP_002221264.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  DV160_RS11140 - 1864773..1865501 (+) 729 WP_002217681.1 amino acid ABC transporter ATP-binding protein -
  DV160_RS11145 - 1865574..1865933 (+) 360 WP_002221265.1 hypothetical protein -
  DV160_RS11150 - 1865938..1866378 (+) 441 WP_002221266.1 protein YgfX -
  DV160_RS11155 folC 1866410..1867684 (+) 1275 WP_002221267.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  DV160_RS11160 tpc 1867697..1868695 (+) 999 WP_002221268.1 cell division protein FtsN Machinery gene
  DV160_RS11165 - 1868688..1869185 (+) 498 WP_002214153.1 CvpA family protein -
  DV160_RS13305 - 1869182..1869352 (+) 171 WP_153308407.1 hypothetical protein -
  DV160_RS11170 purF 1869497..1871041 (+) 1545 WP_002221269.1 amidophosphoribosyltransferase -
  DV160_RS11175 greB 1871141..1871632 (+) 492 WP_002214159.1 transcription elongation factor GreB -
  DV160_RS11180 - 1871691..1872317 (+) 627 WP_002221271.1 phosphoribosylanthranilate isomerase -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 35577.94 Da        Isoelectric Point: 10.1759

>NTDB_id=306090 DV160_RS11160 WP_002221268.1 1867697..1868695(+) (tpc) [Neisseria meningitidis strain M21717]
MSENKQNEVLSGYEQLKRRNRRRLVTASCLVAASCILLAAALSSGPAEQTAGETNGVENKAAGAAQTPALKSAADKPQDL
AGEDKPSAADSEISEPENVGAPLVLINDRLEDSNIKGLEASEKLQQAETAKTAPKQAKQRAAEKVPATADSTDTVAVEKP
KRTAETKPQKAERTAKAKPKAKETKTAEKVADKPKTAAEKTKPDTAKSDSAVKETKKADKAESKKTAEKDRSDGKKHETA
QKTDKADKTKTAEKEKSGKKAAIQAGYAEKERALSLQRKMKAAGIDSTITEIMTDNGKVYRVKSSNYKNARDAERDLNKL
RVHGIAGQVTNE

Nucleotide


Download         Length: 999 bp        

>NTDB_id=306090 DV160_RS11160 WP_002221268.1 1867697..1868695(+) (tpc) [Neisseria meningitidis strain M21717]
ATGTCCGAAAACAAACAAAACGAAGTCCTGAGCGGTTACGAACAACTCAAACGGCGCAACCGCCGCCGCCTCGTAACGGC
AAGTTGCCTGGTTGCCGCCTCCTGCATCCTGCTGGCAGCCGCCCTCAGTTCCGGCCCTGCCGAACAGACTGCCGGCGAAA
CAAACGGCGTAGAAAACAAAGCGGCAGGTGCGGCACAAACCCCTGCCTTGAAATCCGCCGCCGACAAACCGCAGGACTTG
GCAGGCGAAGACAAGCCTTCTGCCGCCGACAGCGAAATCAGCGAGCCTGAAAACGTAGGCGCGCCGCTGGTGCTGATTAA
CGACCGCCTCGAAGACAGCAACATCAAAGGTTTGGAAGCATCCGAGAAACTGCAACAGGCAGAAACCGCCAAAACCGCAC
CGAAGCAGGCAAAACAACGCGCTGCCGAAAAAGTGCCGGCAACTGCCGACAGTACGGATACGGTAGCGGTTGAAAAACCG
AAACGCACTGCCGAAACAAAACCGCAAAAAGCGGAACGCACTGCCAAAGCCAAGCCCAAAGCCAAAGAAACCAAAACCGC
CGAAAAAGTTGCCGACAAACCGAAAACTGCCGCCGAAAAAACCAAACCGGATACGGCAAAATCCGACAGCGCGGTAAAAG
AAACGAAAAAAGCCGACAAGGCTGAAAGCAAAAAAACAGCCGAAAAAGACCGTTCGGACGGCAAAAAACACGAAACGGCA
CAAAAAACCGACAAAGCGGACAAGACCAAAACCGCCGAGAAGGAAAAATCCGGTAAAAAAGCCGCCATTCAGGCAGGTTA
TGCCGAAAAAGAACGCGCCTTAAGCCTCCAGCGCAAAATGAAAGCGGCGGGTATCGATTCGACCATCACCGAAATTATGA
CCGACAACGGCAAAGTTTACCGCGTCAAATCAAGCAACTATAAAAACGCAAGGGATGCCGAACGCGATTTGAACAAATTG
CGCGTACACGGTATCGCCGGTCAGGTAACGAATGAATAA

Domains

Predicted by InterproScan.

SPOR domain (SPOR)

(259-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tpc Neisseria gonorrhoeae MS11

89.595

100

0.934

Multiple sequence alignment