Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EXE34_RS22430 Genome accession   NZ_CP035865
Coordinates   4567267..4567935 (-) Length   222 a.a.
NCBI ID   WP_001298959.1    Uniprot ID   Q31UY8
Organism   Escherichia coli strain E275 a     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4562267..4572935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXE34_RS22400 rfaQ 4562445..4563503 (-) 1059 WP_000360398.1 lipopolysaccharide core heptosyltransferase RfaQ -
  EXE34_RS22405 waaA 4563916..4565193 (+) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  EXE34_RS22410 coaD 4565201..4565680 (+) 480 WP_001171873.1 pantetheine-phosphate adenylyltransferase -
  EXE34_RS22415 mutM 4565719..4566528 (-) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  EXE34_RS22420 rpmG 4566626..4566793 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  EXE34_RS22425 rpmB 4566814..4567050 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  EXE34_RS22430 radC 4567267..4567935 (-) 669 WP_001298959.1 DNA repair protein RadC Machinery gene
  EXE34_RS22435 coaBC 4568107..4569327 (+) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  EXE34_RS22440 dut 4569305..4569763 (+) 459 WP_000976070.1 dUTP diphosphatase -
  EXE34_RS22445 slmA 4569870..4570466 (+) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  EXE34_RS22450 pyrE 4570503..4571144 (-) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  EXE34_RS22455 rph 4571210..4571926 (-) 717 WP_001247097.1 ribonuclease PH -
  EXE34_RS22460 yicC 4572053..4572916 (+) 864 WP_000621340.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25274.35 Da        Isoelectric Point: 7.9748

>NTDB_id=306087 EXE34_RS22430 WP_001298959.1 4567267..4567935(-) (radC) [Escherichia coli strain E275 a]
MKNNSQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=306087 EXE34_RS22430 WP_001298959.1 4567267..4567935(-) (radC) [Escherichia coli strain E275 a]
GTGAAAAACAATTCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGTGTTCATGGAATTGGCGTAGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGACGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCATCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(9-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q31UY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment