Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   DV160_RS01900 Genome accession   NZ_CP031336
Coordinates   312342..315479 (-) Length   1045 a.a.
NCBI ID   WP_420846034.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M21717     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 307342..320479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV160_RS01855 - 307905..308225 (-) 321 WP_002216895.1 DUF1132 family protein -
  DV160_RS01860 - 308344..308643 (-) 300 WP_002216896.1 hypothetical protein -
  DV160_RS01865 - 308671..308901 (-) 231 WP_002216898.1 hypothetical protein -
  DV160_RS01870 - 309128..309328 (-) 201 WP_002212530.1 hypothetical protein -
  DV160_RS01875 - 309332..309643 (-) 312 WP_002220205.1 hypothetical protein -
  DV160_RS01880 - 309664..310872 (-) 1209 WP_002220206.1 replication initiation factor domain-containing protein -
  DV160_RS01900 pilC 312342..315479 (-) 3138 WP_420846034.1 PilC family type IV pilus tip adhesin Machinery gene
  DV160_RS01930 pilA 317384..318649 (-) 1266 WP_002224230.1 signal recognition particle-docking protein FtsY Machinery gene
  DV160_RS01940 msrAB 318794..320362 (+) 1569 WP_002216163.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -

Sequence

Protein


Download         Length: 1045 a.a.        Molecular weight: 115097.79 Da        Isoelectric Point: 9.5608

>NTDB_id=306054 DV160_RS01900 WP_420846034.1 312342..315479(-) (pilC) [Neisseria meningitidis strain M21717]
METAGFPPYRALYRHIDVFPYRRGGGAQAQENPYAIVMNSQKLPEVKWGNSYKKGELRPEDRDRKFTFTSTYGIKRNTNI
TFNNTDYLVSEKNGTAVFGAATYLPPYGKVSGFDTDRLTKRGNAVDWINTTHPGLIGYSYQGITCSSSSCPEFGYKTQFT
FGNSGLAKKTNSSKLDIYEDKSRDNSPIYKLQDYPWLGVSFNLSSDSYVKQKRHNSLVSSFSEDVTQSNGTQSPYKDRNL
VYRTDDYHNKGNYSHQDAHHAIAFYLNAKLHLLDKKQIKNIAQGSELNLGMLKTHIELPKNFNQRSLVGSVVSWTVKDEG
KVSVKLKLPEVKAGRCINKDNPNPKSKAPSPALTAPALWFGPVQNGKAQMYSASVSTYPDSSSSRIFLQNLERKTDPGRP
GRHSLETLTENDIKSRQPNFTGRQTIIRLDSGVQQIKLDQNNTEVVNFNGNSNNATFGIVSEYGLTPDANEWKKVLLPWT
VRAFNDDGRFNTVNKEENNGKPKYSQKYRSRDNGKHERNLGDIVNSPIVAVGEYLATSANDGMVHIFKQSGGDKRSYNLK
LSYIPGTMPRKDIQNTESTLAKELRAFAEKSYVGDRYGVDGGFVLRKVERNGKDHVFMFGAMGFGGRGAYALDLSKIDSG
NGNLADVSLFDVKHDKNGNNGVKLGYTVGTPQIGKTHDGKYAAFLASGYATKDITSGDNKTALYVYDLESSGTLIKKIDV
PGGKGGLSSPTLVDKDLDGTVDIAYAGDRGGNMYRFDLSSQSPDQWTVRPIFEGTKPITSAPAISQLKDKRVVIFGTGSD
LSEEDVDSKEIQHVYGIFDNDTDTGTAQDGQGKGLLEQKLEKDKDGKTLFLSDYKRSDGSGDKGWVVKLEAGQRVTVKPT
VVLRTAFVTIHKYTGNDKCGAETAILGINTADGGKLTKKSARPIVPADNTAVAQYSGHKQTAEGKSIPIGCMEKNNGIVC
PNGYVYDKPVNVRYLDEKKTDGFSTTADGDAGGSGTFKEGKKPARNNRCFSGKGVRTLLMNDLDSLDITGPTCGMKRISW
REVFY

Nucleotide


Download         Length: 3138 bp        

>NTDB_id=306054 DV160_RS01900 WP_420846034.1 312342..315479(-) (pilC) [Neisseria meningitidis strain M21717]
TTGGAAACGGCAGGTTTTCCGCCATACCGCGCTTTATACCGCCATATTGATGTTTTCCCATACCGGCGGGGGGGGGGGGC
GCAGGCGCAGGAGAATCCATACGCTATTGTAATGAACAGTCAAAAGCTGCCCGAGGTAAAGTGGGGGAATTCATATAAAA
AAGGGGAGTTGAGGCCCGAAGACAGGGATCGTAAATTTACCTTTACGAGTACTTATGGAATCAAACGCAACACTAATATC
ACATTCAATAATACCGATTATCTTGTTTCTGAAAAAAACGGTACTGCCGTTTTCGGCGCGGCGACCTACCTGCCGCCCTA
CGGCAAGGTTTCCGGTTTTGATACCGATAGGCTGACCAAGCGCGGCAATGCCGTTGATTGGATTAATACGACCCACCCGG
GGTTGATAGGCTACAGCTACCAAGGTATCACATGCAGCAGCAGCAGCTGTCCTGAATTTGGCTATAAAACCCAATTTACC
TTCGGTAATTCCGGTTTGGCAAAAAAGACAAACAGCAGCAAGCTGGATATATACGAAGACAAAAGCCGCGACAATTCGCC
CATTTACAAATTGCAGGATTATCCTTGGTTGGGCGTGTCTTTCAATTTGAGCAGCGATAGCTACGTCAAACAAAAGAGAC
ACAATAGTTTGGTATCTTCTTTTAGCGAGGATGTGACGCAGAGCAATGGTACGCAAAGCCCATACAAAGACAGAAACCTC
GTTTATCGTACAGACGATTACCATAATAAGGGTAATTATAGCCATCAGGACGCACACCACGCCATCGCCTTTTATCTGAA
CGCCAAGCTGCACCTGCTGGATAAAAAACAAATCAAAAATATCGCGCAAGGCAGTGAACTTAATTTGGGTATGTTGAAAA
CGCACATCGAGCTGCCGAAAAATTTTAATCAAAGGAGCTTGGTAGGTTCGGTGGTTAGTTGGACGGTTAAAGATGAGGGA
AAAGTCAGCGTCAAACTCAAATTGCCGGAAGTCAAAGCAGGCCGCTGCATCAACAAAGATAACCCCAATCCCAAATCCAA
AGCCCCTTCCCCCGCCCTGACCGCCCCCGCGCTGTGGTTCGGACCTGTGCAAAATGGTAAGGCGCAGATGTATTCCGCTT
CGGTTTCCACCTACCCCGACAGTTCGAGCAGCCGCATCTTCCTTCAAAATCTGGAAAGAAAAACCGACCCCGGCAGACCC
GGCCGCCATTCCCTCGAAACCTTGACTGAGAACGATATTAAAAGTCGACAGCCGAATTTCACAGGGCGGCAAACAATCAT
CCGATTGGATAGCGGCGTACAGCAGATTAAACTGGATCAAAACAATACTGAGGTCGTCAATTTTAATGGAAACAGCAACA
ACGCAACTTTCGGCATTGTTAGTGAATATGGCCTCACGCCTGATGCCAATGAGTGGAAAAAAGTATTGCTGCCTTGGACG
GTTCGTGCTTTCAATGATGACGGTCGATTTAACACAGTCAACAAAGAAGAAAACAACGGCAAGCCAAAATACAGTCAAAA
ATACCGCAGCCGCGACAACGGCAAGCACGAGCGCAATTTGGGCGACATCGTCAACAGCCCCATCGTGGCGGTCGGCGAGT
ATTTGGCTACTTCCGCCAACGACGGGATGGTGCATATCTTCAAACAAAGCGGCGGGGACAAGCGCAGCTACAATCTGAAG
CTCAGTTATATCCCGGGTACGATGCCGCGCAAGGATATTCAAAACACCGAATCCACCCTTGCCAAAGAGCTGCGCGCCTT
TGCCGAAAAAAGCTATGTGGGCGACCGCTACGGCGTGGACGGCGGCTTTGTCTTGCGCAAAGTCGAACGGAACGGGAAAG
ACCATGTGTTTATGTTCGGCGCGATGGGCTTTGGCGGCAGAGGCGCGTATGCCTTGGATTTAAGCAAAATCGACAGCGGC
AACGGCAACCTGGCAGACGTTTCCCTGTTTGATGTCAAACATGACAAGAATGGCAATAACGGCGTGAAATTAGGCTACAC
CGTCGGCACACCGCAAATCGGCAAAACCCACGACGGCAAATACGCCGCTTTCCTCGCCTCCGGTTATGCGACTAAAGACA
TTACCAGCGGCGACAATAAAACCGCGCTGTATGTGTATGATTTGGAAAGCAGCGGTACGCTGATTAAAAAAATCGATGTA
CCCGGCGGCAAGGGCGGGCTTTCGTCCCCCACGCTGGTGGATAAAGATTTGGACGGCACGGTCGATATCGCCTATGCCGG
CGATCGCGGCGGGAATATGTACCGCTTTGATTTGAGCAGTCAAAGTCCTGATCAATGGACTGTACGCCCTATTTTTGAAG
GCACAAAACCGATTACTTCCGCGCCCGCCATTTCCCAACTGAAAGACAAACGCGTGGTTATCTTCGGCACGGGCAGCGAT
TTGAGTGAAGAGGATGTGGACAGCAAAGAAATCCAACACGTTTACGGTATTTTTGACAATGACACAGACACGGGTACGGC
GCAAGACGGGCAGGGCAAAGGGCTGCTCGAGCAAAAGCTGGAAAAAGACAAAGACGGCAAAACGCTGTTTTTAAGCGACT
ACAAAAGGTCTGACGGCTCGGGCGACAAGGGCTGGGTAGTGAAATTGGAAGCCGGACAGCGCGTTACCGTCAAACCGACC
GTGGTATTGCGTACCGCCTTTGTAACCATCCATAAATATACGGGTAATGACAAATGCGGCGCGGAAACCGCCATTTTGGG
CATCAATACCGCCGACGGCGGCAAGCTGACCAAGAAAAGCGCGCGCCCGATTGTGCCGGCCGACAATACGGCTGTCGCGC
AATATTCCGGTCATAAGCAAACCGCCGAAGGCAAATCCATCCCTATAGGTTGTATGGAAAAAAACAATGGAATCGTCTGC
CCGAACGGATATGTTTACGACAAACCGGTTAATGTGCGTTATCTGGATGAAAAGAAAACAGACGGATTTTCAACAACGGC
AGACGGCGATGCGGGCGGCAGCGGAACATTCAAAGAGGGTAAAAAACCCGCCCGCAATAACCGGTGCTTCTCCGGAAAAG
GTGTGCGCACCCTGCTGATGAACGATTTGGACAGCTTGGACATTACCGGCCCGACGTGCGGTATGAAACGAATCAGCTGG
CGTGAAGTCTTCTACTGA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(520-852)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

72.493

100

0.726

Multiple sequence alignment