Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   EXE34_RS04495 Genome accession   NZ_CP035865
Coordinates   931137..931742 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain E275 a     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 926137..936742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXE34_RS04465 rsmS 926842..927003 (-) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -
  EXE34_RS04470 priC 927017..927544 (-) 528 WP_000844874.1 primosomal replication protein N'' -
  EXE34_RS04475 ybaN 927614..927991 (+) 378 WP_001188905.1 DUF454 family protein -
  EXE34_RS04480 apt 928144..928695 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  EXE34_RS04485 dnaX 928824..930755 (+) 1932 WP_000122020.1 DNA polymerase III subunit gamma/tau -
  EXE34_RS04490 ybaB 930808..931137 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  EXE34_RS04495 recR 931137..931742 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  EXE34_RS04500 htpG 931852..933726 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  EXE34_RS04505 adk 933907..934551 (+) 645 WP_001220233.1 adenylate kinase -
  EXE34_RS04510 hemH 934787..935749 (+) 963 WP_001250103.1 ferrochelatase -
  EXE34_RS04515 aes 935746..936705 (-) 960 WP_000801813.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=306033 EXE34_RS04495 WP_001195025.1 931137..931742(+) (recR) [Escherichia coli strain E275 a]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=306033 EXE34_RS04495 WP_001195025.1 931137..931742(+) (recR) [Escherichia coli strain E275 a]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAGCTGGAAATGGTCGACGGCAC
CACGTTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment