Detailed information    

insolico Bioinformatically predicted

Overview

Name   tpc   Type   Machinery gene
Locus tag   DV178_RS08200 Genome accession   NZ_CP031335
Coordinates   1389193..1390191 (-) Length   332 a.a.
NCBI ID   WP_002221268.1    Uniprot ID   A0AAD2J6P7
Organism   Neisseria meningitidis strain M25964     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 1384193..1395191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV178_RS08180 - 1385571..1386197 (-) 627 WP_002221271.1 phosphoribosylanthranilate isomerase -
  DV178_RS08185 greB 1386256..1386747 (-) 492 WP_002214159.1 transcription elongation factor GreB -
  DV178_RS08190 purF 1386847..1388391 (-) 1545 WP_002221269.1 amidophosphoribosyltransferase -
  DV178_RS13095 - 1388536..1388706 (-) 171 WP_153308407.1 hypothetical protein -
  DV178_RS08195 - 1388703..1389200 (-) 498 WP_002214153.1 CvpA family protein -
  DV178_RS08200 tpc 1389193..1390191 (-) 999 WP_002221268.1 cell division protein FtsN Machinery gene
  DV178_RS08205 folC 1390204..1391478 (-) 1275 WP_063399872.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  DV178_RS08210 - 1391510..1391950 (-) 441 WP_063399870.1 protein YgfX -
  DV178_RS08215 - 1391955..1392314 (-) 360 WP_002241294.1 hypothetical protein -
  DV178_RS08220 - 1392387..1393115 (-) 729 WP_002233691.1 amino acid ABC transporter ATP-binding protein -
  DV178_RS08225 rsmA 1393288..1394067 (-) 780 WP_063399868.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  DV178_RS08235 - 1394264..1394974 (+) 711 WP_002221263.1 uracil-DNA glycosylase family protein -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 35577.94 Da        Isoelectric Point: 10.1759

>NTDB_id=306031 DV178_RS08200 WP_002221268.1 1389193..1390191(-) (tpc) [Neisseria meningitidis strain M25964]
MSENKQNEVLSGYEQLKRRNRRRLVTASCLVAASCILLAAALSSGPAEQTAGETNGVENKAAGAAQTPALKSAADKPQDL
AGEDKPSAADSEISEPENVGAPLVLINDRLEDSNIKGLEASEKLQQAETAKTAPKQAKQRAAEKVPATADSTDTVAVEKP
KRTAETKPQKAERTAKAKPKAKETKTAEKVADKPKTAAEKTKPDTAKSDSAVKETKKADKAESKKTAEKDRSDGKKHETA
QKTDKADKTKTAEKEKSGKKAAIQAGYAEKERALSLQRKMKAAGIDSTITEIMTDNGKVYRVKSSNYKNARDAERDLNKL
RVHGIAGQVTNE

Nucleotide


Download         Length: 999 bp        

>NTDB_id=306031 DV178_RS08200 WP_002221268.1 1389193..1390191(-) (tpc) [Neisseria meningitidis strain M25964]
ATGTCCGAAAACAAACAAAACGAAGTCCTGAGCGGTTACGAACAACTCAAACGGCGCAACCGCCGCCGCCTCGTAACGGC
AAGTTGCCTGGTTGCCGCCTCCTGCATCCTGCTGGCAGCCGCCCTCAGTTCCGGCCCTGCCGAACAGACTGCCGGCGAAA
CAAACGGCGTAGAAAACAAAGCGGCAGGTGCGGCACAAACCCCTGCCTTGAAATCCGCCGCCGACAAACCGCAGGACTTG
GCAGGCGAAGACAAGCCTTCTGCCGCCGACAGCGAAATCAGCGAGCCTGAAAACGTAGGCGCGCCGCTGGTGCTGATTAA
CGACCGCCTCGAAGACAGCAACATCAAAGGTTTGGAAGCATCCGAGAAACTGCAACAGGCAGAAACCGCCAAAACCGCAC
CGAAGCAGGCAAAACAACGCGCTGCCGAAAAAGTGCCGGCAACTGCCGACAGTACGGATACGGTAGCGGTTGAAAAACCG
AAACGCACTGCCGAAACAAAACCGCAAAAAGCGGAACGCACTGCCAAAGCCAAGCCCAAAGCCAAAGAAACCAAAACCGC
CGAAAAAGTTGCCGACAAACCGAAAACTGCCGCCGAAAAAACCAAACCGGATACGGCAAAATCCGACAGCGCGGTAAAAG
AAACGAAAAAAGCCGACAAGGCTGAAAGCAAAAAAACAGCCGAAAAAGACCGTTCGGACGGCAAAAAACACGAAACGGCA
CAAAAAACCGACAAAGCGGACAAGACCAAAACCGCCGAGAAGGAAAAATCCGGTAAAAAAGCCGCCATTCAGGCAGGTTA
TGCCGAAAAAGAACGCGCCTTAAGCCTCCAGCGCAAAATGAAAGCGGCGGGTATCGATTCGACCATCACCGAAATTATGA
CCGACAACGGCAAAGTTTACCGCGTCAAATCAAGCAACTATAAAAACGCAAGGGATGCCGAACGCGATTTGAACAAATTG
CGCGTACACGGTATCGCCGGTCAGGTAACGAATGAATAA

Domains

Predicted by InterproScan.

SPOR domain (SPOR)

(259-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tpc Neisseria gonorrhoeae MS11

89.595

100

0.934

Multiple sequence alignment