Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   DV178_RS06970 Genome accession   NZ_CP031335
Coordinates   1178429..1180471 (+) Length   680 a.a.
NCBI ID   WP_002221440.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M25964     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1173429..1185471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV178_RS06945 - 1174461..1174636 (+) 176 Protein_1109 response regulator -
  DV178_RS06950 - 1174632..1175882 (+) 1251 WP_002221443.1 ATP-binding protein -
  DV178_RS06955 rng 1175916..1177409 (-) 1494 WP_002244293.1 ribonuclease G -
  DV178_RS06960 grxC 1177622..1177879 (+) 258 WP_002221441.1 glutaredoxin 3 -
  DV178_RS06965 secB 1177900..1178343 (+) 444 WP_002214461.1 protein-export chaperone SecB -
  DV178_RS06970 recG 1178429..1180471 (+) 2043 WP_002221440.1 ATP-dependent DNA helicase RecG Machinery gene
  DV178_RS06975 - 1181371..1181583 (-) 213 WP_115432326.1 hypothetical protein -
  DV178_RS06980 argC 1181627..1182670 (-) 1044 WP_002221439.1 N-acetyl-gamma-glutamyl-phosphate reductase -
  DV178_RS06985 - 1182667..1182948 (-) 282 WP_002221438.1 hypothetical protein -
  DV178_RS06995 - 1183202..1184357 (+) 1156 Protein_1118 JmjC domain-containing protein -
  DV178_RS13710 - 1184366..1184593 (+) 228 WP_002234251.1 hypothetical protein -
  DV178_RS13715 - 1184586..1184804 (+) 219 WP_229009197.1 hypothetical protein -

Sequence

Protein


Download         Length: 680 a.a.        Molecular weight: 74955.00 Da        Isoelectric Point: 7.5197

>NTDB_id=306029 DV178_RS06970 WP_002221440.1 1178429..1180471(+) (recG) [Neisseria meningitidis strain M25964]
MMSPETQKQLKITDVSAKKLDKLNLHTAWDLVLHLPLRYEDETHIMPIKDAPIGVPCQVEGEVIHQEVTFKPRKQLIVQI
ADGSGSVLFLRFIHFYASHQKQTAVGKRIRAVGEIKHGFYGDEMIHPKIRDAEGGGLAESLTPVYPTVNGLNQPTLRRII
QTALDVTPLHDTLPDALLCRLKLPHLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRIGGTA
AALGGDGTLTQALRQALPFALTDAQEKVVSEICRDMAQTYPMHRLLQGDVGSGKTIVAALSALTAIESGAQVAVMAPTEI
LAEQHFIKFKQWLEPLGIEVVRLFGSLRKKAKDEAKAKLADGSVKIAVGTHALFSDGVAFHNLGLTIVDEQHRFGVAQRL
ALKNKGREVHQLMMSATPIPRTLAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLGTCRKGRQAYWVCPLI
EESETLQLQTATETLEQLQTALPELNIGLVHGRMKAAEKAEVMAQFAAGRLNVLVATTVIEVGVDVPNAALMVIEHAERM
GLAQLHQLRGRVGRGAAESVCVLLFAEPLSELAKARLKVIYEHTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFAKLEE
DLHLLEQAREIAPILIEQNPEIVEAHLARWLSGREGYLGV

Nucleotide


Download         Length: 2043 bp        

>NTDB_id=306029 DV178_RS06970 WP_002221440.1 1178429..1180471(+) (recG) [Neisseria meningitidis strain M25964]
ATGATGTCGCCCGAAACCCAGAAACAGCTCAAAATCACCGATGTTTCCGCCAAGAAGCTCGACAAACTCAACCTCCATAC
CGCGTGGGATTTGGTGTTGCACCTGCCGCTGCGTTACGAGGACGAGACGCACATTATGCCGATTAAGGACGCGCCGATTG
GCGTGCCGTGCCAGGTCGAGGGCGAGGTTATCCATCAGGAAGTAACGTTCAAACCGCGCAAGCAGTTGATTGTCCAAATC
GCCGACGGTTCCGGCAGCGTCCTTTTTCTGCGCTTCATCCACTTTTACGCCAGCCATCAGAAACAGACGGCGGTCGGCAA
ACGCATCCGCGCCGTGGGCGAAATCAAACACGGCTTTTACGGCGACGAGATGATTCATCCCAAAATCCGCGATGCCGAGG
GCGGCGGTTTGGCGGAAAGCCTCACGCCGGTTTACCCGACCGTAAACGGTTTGAACCAGCCCACTTTGCGCCGTATTATT
CAGACGGCGTTGGACGTTACGCCGCTGCACGACACGCTGCCCGATGCCCTGCTGTGCCGTCTGAAGCTGCCACACCTCGC
CGAAAGCCTGCGTCTTTTGCATTCGCCGCCGCCGAGTTTCACGATTCATCAGCTTTCAGACGGCACGCTGCCTGCATGGC
AACGGCTCAAATTCGATGAACTTTTGGCGCAACAGCTTTCGATGCGCTTGGCGCGACAGAAGCGTATCGGCGGCACGGCG
GCGGCATTGGGCGGCGACGGCACATTGACCCAAGCCCTGCGCCAAGCCCTGCCGTTTGCCCTGACCGATGCGCAAGAAAA
AGTTGTTTCCGAAATCTGCCGCGATATGGCGCAAACCTACCCGATGCACCGCCTGCTGCAGGGCGATGTCGGCAGCGGCA
AAACCATTGTCGCCGCCTTGTCCGCGCTGACCGCCATCGAATCCGGTGCGCAGGTGGCTGTAATGGCGCCCACTGAAATC
CTTGCCGAACAACATTTTATTAAATTTAAACAATGGCTCGAACCTTTGGGCATTGAAGTTGTCCGCCTTTTTGGCAGTTT
GCGTAAAAAAGCCAAAGACGAAGCCAAAGCCAAACTCGCCGACGGCAGCGTCAAAATCGCCGTCGGCACGCACGCCCTGT
TTTCAGACGGCGTGGCGTTTCACAATTTGGGCTTGACCATTGTGGACGAACAGCACCGTTTCGGCGTTGCCCAACGCCTC
GCCCTCAAAAACAAAGGGCGCGAAGTCCATCAGCTGATGATGTCCGCCACGCCCATCCCGCGCACGCTTGCGATGAGTTT
TTTCGCCGATTTGGACGTGTCCGTCATCGACGAATTGCCGCCCGGGCGCACACCGATTAAAACGCGCCTCGTCAACAACG
TCCGCCGCGCCGAAGTCGAAGGCTTCGTCCTCGGCACTTGCCGAAAAGGGCGGCAGGCGTATTGGGTCTGCCCATTGATT
GAAGAGAGCGAAACCCTGCAACTGCAAACTGCTACCGAAACCCTAGAGCAGCTTCAGACGGCCTTACCCGAACTCAACAT
CGGCTTGGTACACGGGCGCATGAAAGCCGCCGAAAAAGCCGAAGTCATGGCTCAGTTTGCCGCAGGCCGTCTGAACGTCT
TGGTCGCCACCACCGTCATCGAAGTCGGCGTAGATGTGCCCAACGCCGCCCTGATGGTGATCGAACACGCCGAGCGCATG
GGCTTGGCGCAGCTGCACCAATTACGCGGTCGGGTAGGGCGCGGCGCGGCAGAAAGCGTGTGCGTTCTCCTGTTTGCCGA
GCCATTGAGCGAACTCGCCAAAGCGCGGTTGAAAGTCATCTACGAACACACCGACGGCTTTGAAATCGCCCGCCAAGACC
TCAACATCCGCGGCCCCGGCGAATTTCTCGGCGCGCGTCAAAGCGGCGTGCCTATGCTGCGTTTCGCCAAGCTCGAAGAA
GACTTACACCTTTTGGAACAAGCGCGCGAAATCGCCCCGATACTGATTGAGCAAAACCCCGAAATCGTCGAAGCGCATTT
GGCAAGATGGCTTTCCGGCAGGGAAGGGTATTTGGGCGTGTGA

Domains

Predicted by InterproScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(604-666)

DEAD/DEAH box helicase (DEAD)

(262-421)

Helicase conserved C-terminal domain (Helicase_C)

(468-575)

RecG wedge domain (RecG_wedge)

(15-164)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

98.382

100

0.984

Multiple sequence alignment