Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BWG_RS18355 Genome accession   NC_012759
Coordinates   3698240..3698908 (-) Length   222 a.a.
NCBI ID   WP_001350561.1    Uniprot ID   B1X972
Organism   Escherichia coli BW2952     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3693240..3703908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWG_RS18325 (BWG_3323) rfaQ 3693413..3694483 (-) 1071 WP_001350560.1 lipopolysaccharide core heptosyltransferase RfaQ -
  BWG_RS18330 (BWG_3324) waaA 3694889..3696166 (+) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  BWG_RS18335 (BWG_3325) coaD 3696174..3696653 (+) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  BWG_RS18340 (BWG_3326) mutM 3696692..3697501 (-) 810 WP_001114543.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  BWG_RS18345 (BWG_3327) rpmG 3697599..3697766 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  BWG_RS18350 (BWG_3328) rpmB 3697787..3698023 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  BWG_RS18355 (BWG_3329) radC 3698240..3698908 (-) 669 WP_001350561.1 DNA repair protein RadC Machinery gene
  BWG_RS18360 (BWG_3330) coaBC 3699080..3700300 (+) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  BWG_RS18365 (BWG_3331) dut 3700278..3700736 (+) 459 WP_000976073.1 dUTP diphosphatase -
  BWG_RS18370 (BWG_3332) slmA 3700843..3701439 (+) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  BWG_RS18375 (BWG_3333) pyrE 3701476..3702117 (-) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  BWG_RS18380 (BWG_3334) rph 3702183..3702899 (-) 717 WP_001247096.1 ribonuclease PH -
  BWG_RS18385 (BWG_3335) yicC 3703026..3703889 (+) 864 WP_000621340.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25343.46 Da        Isoelectric Point: 8.4958

>NTDB_id=30600 BWG_RS18355 WP_001350561.1 3698240..3698908(-) (radC) [Escherichia coli BW2952]
MKNNSQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHRRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=30600 BWG_RS18355 WP_001350561.1 3698240..3698908(-) (radC) [Escherichia coli BW2952]
GTGAAAAACAATTCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGGCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(9-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B1X972

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment