Detailed information    

insolico Bioinformatically predicted

Overview

Name   tpc   Type   Machinery gene
Locus tag   DV166_RS08470 Genome accession   NZ_CP031334
Coordinates   1434854..1435852 (-) Length   332 a.a.
NCBI ID   WP_115437074.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M22293     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 1429854..1440852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV166_RS08450 - 1431335..1431961 (-) 627 WP_002234733.1 phosphoribosylanthranilate isomerase -
  DV166_RS08455 greB 1432020..1432511 (-) 492 WP_002234734.1 transcription elongation factor GreB -
  DV166_RS08460 purF 1432611..1434155 (-) 1545 WP_061726482.1 amidophosphoribosyltransferase -
  DV166_RS08465 - 1434364..1434861 (-) 498 WP_002237644.1 CvpA family protein -
  DV166_RS08470 tpc 1434854..1435852 (-) 999 WP_115437074.1 cell division protein FtsN Machinery gene
  DV166_RS08475 folC 1435865..1437139 (-) 1275 WP_002222776.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  DV166_RS08480 - 1437171..1437611 (-) 441 WP_115437075.1 protein YgfX -
  DV166_RS08485 - 1437616..1437975 (-) 360 WP_002221265.1 hypothetical protein -
  DV166_RS08490 - 1438048..1438776 (-) 729 WP_002219584.1 amino acid ABC transporter ATP-binding protein -
  DV166_RS08495 rsmA 1438949..1439728 (-) 780 WP_002221264.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  DV166_RS08500 - 1439925..1440614 (+) 690 WP_115437076.1 DNA glycosylase -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 35520.85 Da        Isoelectric Point: 10.1354

>NTDB_id=305983 DV166_RS08470 WP_115437074.1 1434854..1435852(-) (tpc) [Neisseria meningitidis strain M22293]
MSENKQNEVLSGYEQLKRRNRRRLVTASCLVAASCILLAAALSSGPAEQTAGETSGVENKAAGAAQTPALKSAADKPQDL
AGEDKPSAADSEISEPENVGAPLVLINDRLEDSNIKGLEASEKLQQAETAKTAPKQAKQRAAEKVPATADSTDTVAVEKP
KRTAETKPQKAERTAKAKPKAKETKTAEKVADKPKTAAEKTKPDTAKSDSAVKEAKKADKAESKKTAEKDRSDGKKHETA
QKTDQADKTKTAEKEKSGKKAAIQAGYAEKERALSLQRKMKAAGIDSTITEIMTDNGKVYRVKSSNYKNARDAERDLNKL
RVHGIAGQVTNE

Nucleotide


Download         Length: 999 bp        

>NTDB_id=305983 DV166_RS08470 WP_115437074.1 1434854..1435852(-) (tpc) [Neisseria meningitidis strain M22293]
ATGTCCGAAAACAAACAAAACGAAGTCCTGAGCGGTTACGAACAACTCAAACGGCGCAACCGCCGCCGCCTCGTAACGGC
AAGTTGCCTGGTTGCCGCCTCCTGCATCCTGCTGGCAGCCGCCCTCAGTTCCGGCCCTGCCGAACAGACTGCCGGCGAAA
CAAGCGGCGTAGAAAACAAAGCGGCAGGTGCGGCACAAACCCCTGCCTTGAAATCCGCCGCCGACAAACCGCAGGACTTG
GCAGGCGAAGACAAGCCTTCTGCCGCCGACAGCGAAATCAGCGAGCCTGAAAACGTAGGCGCGCCGCTGGTGCTGATTAA
CGACCGCCTCGAAGACAGCAACATCAAAGGTTTGGAAGCATCCGAGAAACTGCAACAGGCAGAAACCGCCAAAACCGCAC
CGAAGCAGGCAAAACAACGCGCTGCCGAAAAAGTGCCGGCAACTGCCGACAGTACGGATACGGTAGCGGTTGAAAAACCG
AAACGCACTGCCGAAACAAAACCGCAAAAAGCGGAACGCACTGCCAAAGCCAAGCCCAAAGCCAAAGAAACCAAAACCGC
CGAAAAAGTTGCCGACAAACCGAAAACTGCCGCCGAAAAAACCAAACCGGATACGGCAAAATCCGACAGCGCGGTAAAAG
AAGCGAAAAAAGCCGACAAGGCTGAAAGCAAAAAAACAGCCGAAAAAGACCGTTCGGACGGCAAAAAACACGAAACGGCA
CAAAAAACCGACCAAGCGGACAAGACCAAAACCGCCGAGAAGGAAAAATCCGGTAAAAAAGCCGCCATTCAGGCAGGTTA
TGCCGAAAAAGAACGCGCCTTAAGCCTCCAGCGCAAAATGAAGGCGGCGGGTATCGATTCGACCATCACCGAAATTATGA
CCGACAACGGCAAAGTTTACCGCGTCAAATCAAGCAACTATAAAAACGCAAGGGATGCCGAACGCGATTTGAACAAATTG
CGCGTACACGGTATCGCCGGTCAGGTAACGAATGAATAA

Domains

Predicted by InterproScan.

SPOR domain (SPOR)

(259-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tpc Neisseria gonorrhoeae MS11

89.595

100

0.934

Multiple sequence alignment