Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   EXA00_RS05740 Genome accession   NZ_CP035860
Coordinates   1177290..1177805 (+) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli strain TD225-C4     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1172290..1182805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXA00_RS05695 csrA 1172877..1173062 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  EXA00_RS05725 yqaB 1174520..1175086 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  EXA00_RS05730 yqaA 1175083..1175511 (+) 429 WP_001287457.1 YqaA family protein -
  EXA00_RS05735 gshA 1175584..1177140 (+) 1557 WP_000611802.1 glutamate--cysteine ligase -
  EXA00_RS05740 luxS 1177290..1177805 (+) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  EXA00_RS05745 emrB 1177869..1179407 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  EXA00_RS05750 emrA 1179424..1180596 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  EXA00_RS05755 emrR 1180723..1181253 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  EXA00_RS05760 ygaH 1181344..1181679 (-) 336 WP_000119750.1 L-valine transporter subunit YgaH -
  EXA00_RS05765 ygaZ 1181669..1182406 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=305967 EXA00_RS05740 WP_001130207.1 1177290..1177805(+) (luxS) [Escherichia coli strain TD225-C4]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=305967 EXA00_RS05740 WP_001130207.1 1177290..1177805(+) (luxS) [Escherichia coli strain TD225-C4]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAATGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731