Detailed information NTG0305964

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EXA00_RS05450
• Genome accession: NZ_CP035860
• Coordinates: 1122655..1123647 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain TD225-C4
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1117655..1128647

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EXA00_RS05420	ispD	1117716..1118426 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
EXA00_RS05425	ispF	1118426..1118905 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EXA00_RS05430	truD	1118902..1119951 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
EXA00_RS05435	surE	1119932..1120693 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
EXA00_RS05440	pcm	1120687..1121313 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
EXA00_RS05445	nlpD	1121498..1122592 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
EXA00_RS05450	rpoS	1122655..1123647 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
EXA00_RS05455	ygbN	1123741..1125105 (-)	1365	WP_000104456.1	GntP family transporter	-
EXA00_RS05460	ygbM	1125194..1125970 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
EXA00_RS05465	ygbL	1125975..1126613 (-)	639	WP_001278994.1	aldolase	-
EXA00_RS05470	otnK	1126610..1127872 (-)	1263	WP_000590392.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=305964 EXA00_RS05450 WP_000081550.1 1122655..1123647(+) (rpoS) [Escherichia coli strain TD225-C4]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=305964 EXA00_RS05450 WP_000081550.1 1122655..1123647(+) (rpoS) [Escherichia coli strain TD225-C4]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715