Detailed information    

insolico Bioinformatically predicted

Overview

Name   tpc   Type   Machinery gene
Locus tag   DV143_RS12880 Genome accession   NZ_CP031333
Coordinates   2180543..2181541 (-) Length   332 a.a.
NCBI ID   WP_002214152.1    Uniprot ID   X5F838
Organism   Neisseria meningitidis strain M18727     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 2175543..2186541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV143_RS12860 - 2177024..2177650 (-) 627 WP_002222779.1 phosphoribosylanthranilate isomerase -
  DV143_RS12865 greB 2177709..2178200 (-) 492 WP_002214159.1 transcription elongation factor GreB -
  DV143_RS12870 purF 2178300..2179844 (-) 1545 WP_002222778.1 amidophosphoribosyltransferase -
  DV143_RS12875 - 2180053..2180550 (-) 498 WP_002222777.1 CvpA family protein -
  DV143_RS12880 tpc 2180543..2181541 (-) 999 WP_002214152.1 cell division protein FtsN Machinery gene
  DV143_RS12885 folC 2181554..2182828 (-) 1275 WP_002222776.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  DV143_RS12890 - 2182860..2183306 (-) 447 WP_002222775.1 protein YgfX -
  DV143_RS12895 - 2183311..2183670 (-) 360 WP_002221265.1 hypothetical protein -
  DV143_RS12900 - 2183743..2184471 (-) 729 WP_002217681.1 amino acid ABC transporter ATP-binding protein -
  DV143_RS12905 rsmA 2184644..2185423 (-) 780 WP_014581516.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  DV143_RS12915 - 2185635..2186345 (+) 711 WP_002240398.1 DNA glycosylase -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 35520.89 Da        Isoelectric Point: 10.1759

>NTDB_id=305946 DV143_RS12880 WP_002214152.1 2180543..2181541(-) (tpc) [Neisseria meningitidis strain M18727]
MSENKQNEVLSGYEQLKRRNRRRLVTASCLVAASCILLAAALSSGPAEQTAGETSGVENKAAGAAQTPALKSAADKPQDL
AGEDKPSAADSEISEPENVGAPLVLINDRLEDSNIKGLEASEKLQQAETAKTAPKQAKQRAAEKVPATADSTDTVAVEKP
KRTAETKPQKAERTAKAKPKAKETKTAEKVADKPKTAAEKTKPDTAKSDSAVKEAKKADKAESKKTAEKDRSDGKKHETA
QKTDKADKTKTAEKEKSGKKAAIQAGYAEKERALSLQRKMKAAGIDSTITEIMTDNGKVYRVKSSNYKNARDAERDLNKL
RVHGIAGQVTNE

Nucleotide


Download         Length: 999 bp        

>NTDB_id=305946 DV143_RS12880 WP_002214152.1 2180543..2181541(-) (tpc) [Neisseria meningitidis strain M18727]
ATGTCCGAAAACAAACAAAACGAAGTCCTGAGCGGTTACGAACAACTCAAACGGCGCAACCGCCGCCGCCTCGTAACGGC
AAGTTGCCTGGTTGCCGCCTCCTGCATCCTGCTGGCAGCCGCCCTCAGTTCCGGCCCTGCCGAACAGACTGCCGGCGAAA
CAAGCGGCGTAGAAAACAAAGCGGCAGGTGCGGCACAAACCCCTGCCTTGAAATCCGCCGCCGACAAACCGCAGGACTTG
GCAGGCGAAGACAAGCCTTCTGCCGCCGACAGCGAAATCAGCGAGCCTGAAAACGTAGGCGCGCCGCTGGTGCTGATTAA
CGACCGCCTCGAAGACAGCAACATCAAAGGTTTGGAAGCATCCGAGAAACTGCAACAGGCAGAAACCGCCAAAACCGCAC
CGAAGCAGGCAAAACAACGCGCTGCCGAAAAAGTGCCGGCAACTGCCGACAGTACGGATACGGTAGCGGTTGAAAAACCG
AAACGCACTGCCGAAACAAAACCGCAAAAAGCGGAACGCACTGCCAAAGCCAAGCCCAAAGCCAAAGAAACCAAAACCGC
CGAAAAAGTTGCCGACAAACCGAAAACTGCCGCCGAAAAAACCAAACCGGATACGGCAAAATCCGACAGCGCGGTAAAAG
AAGCGAAAAAAGCCGACAAGGCTGAAAGCAAAAAAACAGCCGAAAAAGACCGTTCGGACGGCAAAAAACACGAAACGGCA
CAAAAAACCGACAAAGCGGACAAGACCAAAACCGCCGAGAAGGAAAAATCCGGTAAAAAAGCCGCCATTCAGGCAGGTTA
TGCCGAAAAAGAACGCGCCTTAAGCCTCCAGCGCAAAATGAAGGCGGCGGGTATCGATTCGACCATCACCGAAATTATGA
CCGACAACGGCAAAGTTTACCGCGTCAAATCAAGCAACTATAAAAACGCAAGGGATGCCGAACGCGATTTGAACAAATTG
CGCGTACACGGTATCGCCGGTCAGGTAACGAATGAATAA

Domains

Predicted by InterproScan.

SPOR domain (SPOR)

(259-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB X5F838

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tpc Neisseria gonorrhoeae MS11

89.884

100

0.937

Multiple sequence alignment